Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.1.17.3

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.89363	0.511
27DAP/17DAP	1.08577	0.88
39DAP/27DAP	0.86468	0.522
41DAP/39DAP	1.554	0.268
42DAP/41DAP	1.18527	0.967
43DAP/42DAP	1.13243	0.906
47DAP/43DAP	0.88442	0.628
52DAP/47DAP	0.86968	0.695
57DAP/52DAP	1.12413	0.93

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.1236	0.384
17DAP/reference	1.16336	0.016
27DAP/reference	1.04572	0.509
39DAP/reference	1.02938	0.57
41DAP/reference	1.27553	0.013
42DAP/reference	0.98788	0.413
43DAP/reference	1.0052	0.924
47DAP/reference	0.91577	0.083
52DAP/reference	0.80946	0.115
57DAP/reference	0.74835	0.012

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.94119	0.363
27DAP/17DAP	1.00432	0.995
39DAP/27DAP	0.96265	0.721
41DAP/39DAP	1.09325	0.612
42DAP/41DAP	1.03307	0.999
43DAP/42DAP	1.00351	0.83
47DAP/43DAP	0.97651	0.796
52DAP/47DAP	1.00278	1
57DAP/52DAP	1.00724	1
57DAP/7DAP	1.05161	0.365

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94161	0.402
17DAP/reference	0.89725	0.253
27DAP/reference	1.05925	0.614
39DAP/reference	1.00038	1
41DAP/reference	0.88014	0.07
42DAP/reference	0.87203	0.13
43DAP/reference	0.91971	0.252
47DAP/reference	0.95716	0.504
52DAP/reference	1.25233	0.286
57DAP/reference	1.09365	0.851

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.21349	0.087
17DAP/reference	1.16626	0.12
27DAP/reference	0.87427	0.188
39DAP/reference	0.94434	0.33
41DAP/reference	0.91693	0.13
42DAP/reference	0.89623	0.15
43DAP/reference	1.07951	1
47DAP/reference	0.97653	0.423
52DAP/reference	1.26872	0.069
57DAP/reference	1.23712	0.229

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.93427	0.489
17DAP/reference	1.09962	0.602
27DAP/reference	10.445	0.531
39DAP/reference	0.91964	0.464
41DAP/reference	1.03323	0.889
42DAP/reference	0.73585	0.059
43DAP/reference	0.68962	0.084
47DAP/reference	0.99095	0.61
52DAP/reference	0.93228	0.582
57DAP/reference	0.77029	0.071

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.95173	1
26DAP/20DAP	0.8983	0.512
34DAP/26DAP	1.0816	0.542
51DAP/34DAP	0.91194	0.369
52DAP/51DAP	0.99489	1
53DAP/52DAP	1.10891	0.697
55DAP/53DAP	0.97689	0.725
57DAP/55DAP	1.22467	0.474
62DAP/57DAP	1.19527	0.723
68DAP/62DAP	1.03998	0.914
68DAP/14DAP	0.86677	0.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.8879	0.033

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	0.26117	0.224
Mature Eggplant/Ripe Tomato	0.23533	0.234

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.66985	0.934
1-1-2/M82	0.88909	1
12-2/M82	0.85335
12-4/M82	1.00138	1
1-3/M82	0.9168	1
2-1-1/M82	1.00052	1
2-1/M82	0.93169	1
2-6/M82	1.09932	1
3-2/M82	0.69258
4-1-1/M82	1.00067	1
4-1/M82	1.57699
4-3-2/M82	1.37705
4-3/M82	1.51267	1
5-3/M82	0.68238	0.374
6-2/M82	1.07075	1
6-3/M82	1.04421	1
7-1/M82	1.48003	0.741
7-2/M82	0.85723	0.881
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.38902	0.247
IL2-6/WTpooled	1.30181	0.395
IL7-5/WTpooled	0.86173	1
IL7-3/WTpooled	0.37189	0.294
IL12-4/WTpooled	0.72333	0.71
IL1-4/WTpooled	0.77975	0.476
WT/WTpooled	1.00276	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.16027	0.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.97004	1
DC3000/delta hrp 6h	1.06716	1
DC3000/delta hrp 12h	1.12947	1
DC3000/delta hrp 24h	1.0287	0.84

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.07784	0.081
DC3000 delta B/DC3000 delta AB	1.06614	0.472

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.27127	1
Exp 36h	2.40805	1
Exp 60h	1.30884	1

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.00792	1
Var 0h	0.84745	0.933
Var 12h I row2-row1	1.10349	0.379
Var 12h NI row2-row1	0.82714	0.488
Var 36h I row2-row1	0.84162	0.805
Var 36h NI row2-row1	0.94127	0.706
Var 60h I row2-row1	1.68783	1
Var 60h NI row2-row1	1.4169	0.904
Time course 0hI-0hNI	1.11451	0.799
Time course 12hI-12hNI	1.0563	0.599
Time course 36hI-36hNI	0.96707	0.476
Time course 60hI-60hNI	0.97619	0.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.18486	0.798
transgenic ySAMdc/azygous control (breaker)	0.71662	0.137
transgenic ySAMdc/azygous control (red)	1.39488	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.09113	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.82817	1
Manapal/WT (break)	0.54899	0.333
Manapal/WT (red)	0.82687	0.184