Expression of 1-1-5.1.17.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.108290.755
27DAP/17DAP1.004610.994
39DAP/27DAP1.283360.601
41DAP/39DAP0.789590.343
42DAP/41DAP1.083090.962
43DAP/42DAP1.25770.724
47DAP/43DAP1.182160.776
52DAP/47DAP0.971140.812
57DAP/52DAP1.092511

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.010451
17DAP/reference0.984580.737
27DAP/reference1.049260.559
39DAP/reference0.975490.691
41DAP/reference0.993090.814
42DAP/reference1.044870.782
43DAP/reference0.971510.653
47DAP/reference1.174550.062
52DAP/reference1.597060.011
57DAP/reference1.232870.056

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.938980.542
27DAP/17DAP1.030830.995
39DAP/27DAP1.255980.095
41DAP/39DAP1.073391
42DAP/41DAP1.054590.947
43DAP/42DAP1.275960.04
47DAP/43DAP1.103670.396
52DAP/47DAP1.182980.417
57DAP/52DAP0.940020.584
57DAP/7DAP1.166791

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.837420.104
17DAP/reference0.871130.447
27DAP/reference0.706410.055
39DAP/reference1.005830.64
41DAP/reference1.036421
42DAP/reference0.763310.014
43DAP/reference0.858360.126
47DAP/reference0.937110.383
52DAP/reference1.076580.526
57DAP/reference0.957980.443

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.105950.501
17DAP/reference1.182970.048
27DAP/reference1.210540.087
39DAP/reference1.487530.023
41DAP/reference1.480190.012
42DAP/reference1.153420.185
43DAP/reference1.043220.831
47DAP/reference1.018230.675
52DAP/reference1.383370.008
57DAP/reference1.091570.374

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.062790.676
17DAP/reference1.048010.932
27DAP/reference0.967980.691
39DAP/reference1.113750.752
41DAP/reference0.941930.56
42DAP/reference2.308240.037
43DAP/reference1.423730.59
47DAP/reference1.343740.026
52DAP/reference0.83870.493
57DAP/reference2.021260.013

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.258690.966
26DAP/20DAP0.88940.512
34DAP/26DAP1.073731
51DAP/34DAP1.240890.053
52DAP/51DAP1.05940.662
53DAP/52DAP1.04520.858
55DAP/53DAP1.007660.951
57DAP/55DAP1.042560.997
62DAP/57DAP1.194780.767
68DAP/62DAP1.440550.077
68DAP/14DAP1.195240.578

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.134470.077

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.443250.115
Mature Green Tomato/Ripe Tomato0.18305
Immature Eggplant/Mature Eggplant2.093540.05
Ripe Pepper/Ripe Tomato1.506011
Mature Eggplant/Ripe Tomato0.843281

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.880370.736
1-1-2/M820.979831
12-2/M820.844510.955
12-4/M820.697230.358
1-3/M821.525890.479
2-1-1/M820.852140.465
2-1/M821.280951
2-6/M821.291050.594
3-2/M820.85669
4-1-1/M821.163640.977
4-1/M820.94663
4-3-2/M821.66384
4-3/M821.518121
5-3/M820.874890.642
6-2/M821.096621
6-3/M821.10331
7-1/M820.945270.803
7-2/M821.514760.324
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.75390.243
IL2-6/WTpooled1.460320.419
IL7-5/WTpooled1.393010.792
IL7-3/WTpooled0.829960.418
IL12-4/WTpooled0.882680.71
IL1-4/WTpooled1.017081
WT/WTpooled0.97441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.841380.148

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.970761
DC3000/delta hrp 6h0.984560.95
DC3000/delta hrp 12h1.200691
DC3000/delta hrp 24h1.049810.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.298450.043
DC3000 delta B/DC3000 delta AB1.349640.106

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.155451
Exp 36h1.832140.693
Exp 60h1.295471

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.95551
Var 0h0.603691
Var 12h I row2-row10.913320.856
Var 12h NI row2-row11.988380.649
Var 36h I row2-row11.208361
Var 36h NI row2-row10.713280.522
Var 60h I row2-row10.901220.952
Var 60h NI row2-row10.65880.292
Time course 0hI-0hNI1.081940.764
Time course 12hI-12hNI1.54010.02
Time course 36hI-36hNI4.354370.004
Time course 60hI-60hNI12.79370.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.851930.314
transgenic ySAMdc/azygous control (breaker)0.726170.15
transgenic ySAMdc/azygous control (red)0.968851

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.776270.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)5.3560.105
Manapal/WT (break)2.91290.126
Manapal/WT (red)1.838920.413