Expression of 1-1-5.1.17.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10829 | 0.755 |
27DAP/17DAP | 1.00461 | 0.994 |
39DAP/27DAP | 1.28336 | 0.601 |
41DAP/39DAP | 0.78959 | 0.343 |
42DAP/41DAP | 1.08309 | 0.962 |
43DAP/42DAP | 1.2577 | 0.724 |
47DAP/43DAP | 1.18216 | 0.776 |
52DAP/47DAP | 0.97114 | 0.812 |
57DAP/52DAP | 1.09251 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01045 | 1 |
17DAP/reference | 0.98458 | 0.737 |
27DAP/reference | 1.04926 | 0.559 |
39DAP/reference | 0.97549 | 0.691 |
41DAP/reference | 0.99309 | 0.814 |
42DAP/reference | 1.04487 | 0.782 |
43DAP/reference | 0.97151 | 0.653 |
47DAP/reference | 1.17455 | 0.062 |
52DAP/reference | 1.59706 | 0.011 |
57DAP/reference | 1.23287 | 0.056 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93898 | 0.542 |
27DAP/17DAP | 1.03083 | 0.995 |
39DAP/27DAP | 1.25598 | 0.095 |
41DAP/39DAP | 1.07339 | 1 |
42DAP/41DAP | 1.05459 | 0.947 |
43DAP/42DAP | 1.27596 | 0.04 |
47DAP/43DAP | 1.10367 | 0.396 |
52DAP/47DAP | 1.18298 | 0.417 |
57DAP/52DAP | 0.94002 | 0.584 |
57DAP/7DAP | 1.16679 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83742 | 0.104 |
17DAP/reference | 0.87113 | 0.447 |
27DAP/reference | 0.70641 | 0.055 |
39DAP/reference | 1.00583 | 0.64 |
41DAP/reference | 1.03642 | 1 |
42DAP/reference | 0.76331 | 0.014 |
43DAP/reference | 0.85836 | 0.126 |
47DAP/reference | 0.93711 | 0.383 |
52DAP/reference | 1.07658 | 0.526 |
57DAP/reference | 0.95798 | 0.443 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10595 | 0.501 |
17DAP/reference | 1.18297 | 0.048 |
27DAP/reference | 1.21054 | 0.087 |
39DAP/reference | 1.48753 | 0.023 |
41DAP/reference | 1.48019 | 0.012 |
42DAP/reference | 1.15342 | 0.185 |
43DAP/reference | 1.04322 | 0.831 |
47DAP/reference | 1.01823 | 0.675 |
52DAP/reference | 1.38337 | 0.008 |
57DAP/reference | 1.09157 | 0.374 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06279 | 0.676 |
17DAP/reference | 1.04801 | 0.932 |
27DAP/reference | 0.96798 | 0.691 |
39DAP/reference | 1.11375 | 0.752 |
41DAP/reference | 0.94193 | 0.56 |
42DAP/reference | 2.30824 | 0.037 |
43DAP/reference | 1.42373 | 0.59 |
47DAP/reference | 1.34374 | 0.026 |
52DAP/reference | 0.8387 | 0.493 |
57DAP/reference | 2.02126 | 0.013 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.25869 | 0.966 |
26DAP/20DAP | 0.8894 | 0.512 |
34DAP/26DAP | 1.07373 | 1 |
51DAP/34DAP | 1.24089 | 0.053 |
52DAP/51DAP | 1.0594 | 0.662 |
53DAP/52DAP | 1.0452 | 0.858 |
55DAP/53DAP | 1.00766 | 0.951 |
57DAP/55DAP | 1.04256 | 0.997 |
62DAP/57DAP | 1.19478 | 0.767 |
68DAP/62DAP | 1.44055 | 0.077 |
68DAP/14DAP | 1.19524 | 0.578 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.13447 | 0.077 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.44325 | 0.115 |
Mature Green Tomato/Ripe Tomato | 0.18305 | |
Immature Eggplant/Mature Eggplant | 2.09354 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.50601 | 1 |
Mature Eggplant/Ripe Tomato | 0.84328 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.88037 | 0.736 |
1-1-2/M82 | 0.97983 | 1 |
12-2/M82 | 0.84451 | 0.955 |
12-4/M82 | 0.69723 | 0.358 |
1-3/M82 | 1.52589 | 0.479 |
2-1-1/M82 | 0.85214 | 0.465 |
2-1/M82 | 1.28095 | 1 |
2-6/M82 | 1.29105 | 0.594 |
3-2/M82 | 0.85669 | |
4-1-1/M82 | 1.16364 | 0.977 |
4-1/M82 | 0.94663 | |
4-3-2/M82 | 1.66384 | |
4-3/M82 | 1.51812 | 1 |
5-3/M82 | 0.87489 | 0.642 |
6-2/M82 | 1.09662 | 1 |
6-3/M82 | 1.1033 | 1 |
7-1/M82 | 0.94527 | 0.803 |
7-2/M82 | 1.51476 | 0.324 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.7539 | 0.243 |
IL2-6/WTpooled | 1.46032 | 0.419 |
IL7-5/WTpooled | 1.39301 | 0.792 |
IL7-3/WTpooled | 0.82996 | 0.418 |
IL12-4/WTpooled | 0.88268 | 0.71 |
IL1-4/WTpooled | 1.01708 | 1 |
WT/WTpooled | 0.9744 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.84138 | 0.148 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97076 | 1 |
DC3000/delta hrp 6h | 0.98456 | 0.95 |
DC3000/delta hrp 12h | 1.20069 | 1 |
DC3000/delta hrp 24h | 1.04981 | 0.595 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.29845 | 0.043 |
DC3000 delta B/DC3000 delta AB | 1.34964 | 0.106 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15545 | 1 |
Exp 36h | 1.83214 | 0.693 |
Exp 60h | 1.29547 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9555 | 1 |
Var 0h | 0.60369 | 1 |
Var 12h I row2-row1 | 0.91332 | 0.856 |
Var 12h NI row2-row1 | 1.98838 | 0.649 |
Var 36h I row2-row1 | 1.20836 | 1 |
Var 36h NI row2-row1 | 0.71328 | 0.522 |
Var 60h I row2-row1 | 0.90122 | 0.952 |
Var 60h NI row2-row1 | 0.6588 | 0.292 |
Time course 0hI-0hNI | 1.08194 | 0.764 |
Time course 12hI-12hNI | 1.5401 | 0.02 |
Time course 36hI-36hNI | 4.35437 | 0.004 |
Time course 60hI-60hNI | 12.7937 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.85193 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 0.72617 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.96885 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77627 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 5.356 | 0.105 |
Manapal/WT (break) | 2.9129 | 0.126 |
Manapal/WT (red) | 1.83892 | 0.413 |
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