Expression of 1-1-5.1.17.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.975930.752
27DAP/17DAP1.216830.842
39DAP/27DAP1.12940.903
41DAP/39DAP0.976230.845
42DAP/41DAP1.034291
43DAP/42DAP1.330250.676
47DAP/43DAP1.051070.966
52DAP/47DAP0.973050.698
57DAP/52DAP0.97090.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.720850.027
17DAP/reference0.817880.017
27DAP/reference0.872080.134
39DAP/reference0.813620.027
41DAP/reference0.717920.008
42DAP/reference0.814270.006
43DAP/reference0.912860.234
47DAP/reference0.888790.161
52DAP/reference1.053880.878
57DAP/reference1.263750.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.317930.379
27DAP/17DAP1.220620.775
39DAP/27DAP1.166610.532
41DAP/39DAP1.095010.876
42DAP/41DAP0.992750.872
43DAP/42DAP1.455230.25
47DAP/43DAP1.040491
52DAP/47DAP1.323650.351
57DAP/52DAP1.376760.143
57DAP/7DAP0.62597

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.198430.235
17DAP/reference1.115840.627
27DAP/reference1.077440.804
39DAP/reference0.899280.02
41DAP/reference0.854320.079
42DAP/reference1.020940.713
43DAP/reference1.016810.727
47DAP/reference1.034461
52DAP/reference1.03560.886
57DAP/reference1.184050.214

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.820780.079
17DAP/reference0.640780.004
27DAP/reference0.747160.038
39DAP/reference0.874220.095
41DAP/reference0.981160.481
42DAP/reference0.850690.061
43DAP/reference0.630160.01
47DAP/reference0.846020.058
52DAP/reference0.886310.025
57DAP/reference0.653980.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.94370.422
17DAP/reference0.952580.56
27DAP/reference0.846920.165
39DAP/reference0.923850.179
41DAP/reference1.154450.502
42DAP/reference1.048751
43DAP/reference1.124350.744
47DAP/reference0.957010.409
52DAP/reference0.941880.472
57DAP/reference1.274530.015

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.133670.966
26DAP/20DAP1.654190.587
34DAP/26DAP0.883260.741
51DAP/34DAP1.395410.84
52DAP/51DAP1.399320.117
53DAP/52DAP1.103020.901
55DAP/53DAP0.990620.675
57DAP/55DAP0.72990.154
62DAP/57DAP1.07050.833
68DAP/62DAP1.924410.01
68DAP/14DAP2.557290.055

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.616610.068

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper9.34265
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.624780.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.42749
1-1-2/M820.814390.958
12-2/M820.9639
12-4/M821.00879
1-3/M820.79766
2-1-1/M820.96517
2-1/M82N/AN/A
2-6/M820.87017
3-2/M821.14922
4-1-1/M820.97575
4-1/M821.52472
4-3-2/M820.99964
4-3/M821.06681
5-3/M821.095931
6-2/M821.26727
6-3/M821.27605
7-1/M820.95205
7-2/M821.061131
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.694690.277
IL2-6/WTpooled0.789721
IL7-5/WTpooled0.985881
IL7-3/WTpooled1.61571
IL12-4/WTpooled1.132510.785
IL1-4/WTpooled1.434920.421
WT/WTpooled1.006481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.35312

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.060120.921
DC3000/delta hrp 6h7.33832
DC3000/delta hrp 12h0.977571
DC3000/delta hrp 24h1.020260.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.72979
DC3000 delta B/DC3000 delta AB0.879020.558

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.943161
Exp 36h2.039740.693
Exp 60h1.263341

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.03308
Var 0h1.229550.98
Var 12h I row2-row11.529480.187
Var 12h NI row2-row11.1210.649
Var 36h I row2-row11.222970.283
Var 36h NI row2-row10.838340.584
Var 60h I row2-row10.891230.285
Var 60h NI row2-row11.177050.4
Time course 0hI-0hNI0.838910.252
Time course 12hI-12hNI1.543260.507
Time course 36hI-36hNI1.503360.114
Time course 60hI-60hNI0.983730.029

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.255580.541
transgenic ySAMdc/azygous control (breaker)1.291690.248
transgenic ySAMdc/azygous control (red)1.110860.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.068431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.170760.307
Manapal/WT (break)1.085831
Manapal/WT (red)0.954350.607