Expression of 1-1-5.1.17.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.151730.534
27DAP/17DAP0.698710.359
39DAP/27DAP1.18891
41DAP/39DAP1.741910.222
42DAP/41DAP0.992061
43DAP/42DAP1.000090.931
47DAP/43DAP1.244030.595
52DAP/47DAP0.934860.721
57DAP/52DAP0.986590.974

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.860170.118
17DAP/reference0.955420.536
27DAP/reference1.004040.904
39DAP/reference0.907210.083
41DAP/reference0.856140.114
42DAP/reference0.952650.124
43DAP/reference0.919520.084
47DAP/reference0.876970.005
52DAP/reference0.921310.258
57DAP/reference0.978850.526

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.186470.87
27DAP/17DAP1.224770.836
39DAP/27DAP1.005381
41DAP/39DAP0.882130.98
42DAP/41DAP0.857510.548
43DAP/42DAP0.79929
47DAP/43DAP1.067940.772
52DAP/47DAP1.232540.975
57DAP/52DAP1.211410.584
57DAP/7DAP1.318031

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.006171
17DAP/reference1.085150.822
27DAP/reference1.057430.804
39DAP/reference0.944670.411
41DAP/reference0.990640.677
42DAP/reference1.08690.534
43DAP/reference1.074090.873
47DAP/reference0.906960.383
52DAP/reference0.992130.621
57DAP/reference1.114850.468

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.837110.049
17DAP/reference0.881060.129
27DAP/reference0.817870.045
39DAP/reference0.871430.091
41DAP/reference0.85580.026
42DAP/reference0.875860.073
43DAP/reference0.856640.121
47DAP/reference0.91950.11
52DAP/reference0.926320.156
57DAP/reference0.870010.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.990680.455
17DAP/reference1.158630.443
27DAP/reference1.451070.044
39DAP/reference0.943580.504
41DAP/reference1.304330.257
42DAP/reference0.889210.361
43DAP/reference0.875110.216
47DAP/reference0.875550.01
52DAP/reference1.407850.601
57DAP/reference0.98880.693

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.106630.966
26DAP/20DAPN/AN/A
34DAP/26DAP1.283570.542
51DAP/34DAP1.158670.898
52DAP/51DAP0.808360.151
53DAP/52DAP1.144460.895
55DAP/53DAP1.0060.908
57DAP/55DAP1.22240.71
62DAP/57DAP1.107870.8
68DAP/62DAP1.134260.523
68DAP/14DAP1.122270.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.14725

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper8.82457
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.17867
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.93832
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.84858
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.777540.247
IL2-6/WTpooled1.212210.427
IL7-5/WTpooled0.809621
IL7-3/WTpooled0.969311
IL12-4/WTpooled1.102840.557
IL1-4/WTpooled1.051251
WT/WTpooled1.078310.818

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.957351
DC3000/delta hrp 6h1.064911
DC3000/delta hrp 12h0.920081
DC3000/delta hrp 24h1.070570.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.928091
Exp 36h0.372950.449
Exp 60h0.512960.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.215370.594
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row10.67020.546
Var 36h I row2-row10.96612
Var 36h NI row2-row10.600421
Var 60h I row2-row10.81748
Var 60h NI row2-row11.058921
Time course 0hI-0hNI1.5966
Time course 12hI-12hNI1.050480.774
Time course 36hI-36hNI0.253270.023
Time course 60hI-60hNI3.141320.16

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.138190.863
transgenic ySAMdc/azygous control (breaker)2.7840.178
transgenic ySAMdc/azygous control (red)0.980621

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.206420.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)4.868440.105
Manapal/WT (break)2.940850.13
Manapal/WT (red)1.186841