Expression of 1-1-5.1.17.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15173 | 0.534 |
27DAP/17DAP | 0.69871 | 0.359 |
39DAP/27DAP | 1.1889 | 1 |
41DAP/39DAP | 1.74191 | 0.222 |
42DAP/41DAP | 0.99206 | 1 |
43DAP/42DAP | 1.00009 | 0.931 |
47DAP/43DAP | 1.24403 | 0.595 |
52DAP/47DAP | 0.93486 | 0.721 |
57DAP/52DAP | 0.98659 | 0.974 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86017 | 0.118 |
17DAP/reference | 0.95542 | 0.536 |
27DAP/reference | 1.00404 | 0.904 |
39DAP/reference | 0.90721 | 0.083 |
41DAP/reference | 0.85614 | 0.114 |
42DAP/reference | 0.95265 | 0.124 |
43DAP/reference | 0.91952 | 0.084 |
47DAP/reference | 0.87697 | 0.005 |
52DAP/reference | 0.92131 | 0.258 |
57DAP/reference | 0.97885 | 0.526 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18647 | 0.87 |
27DAP/17DAP | 1.22477 | 0.836 |
39DAP/27DAP | 1.00538 | 1 |
41DAP/39DAP | 0.88213 | 0.98 |
42DAP/41DAP | 0.85751 | 0.548 |
43DAP/42DAP | 0.79929 | |
47DAP/43DAP | 1.06794 | 0.772 |
52DAP/47DAP | 1.23254 | 0.975 |
57DAP/52DAP | 1.21141 | 0.584 |
57DAP/7DAP | 1.31803 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00617 | 1 |
17DAP/reference | 1.08515 | 0.822 |
27DAP/reference | 1.05743 | 0.804 |
39DAP/reference | 0.94467 | 0.411 |
41DAP/reference | 0.99064 | 0.677 |
42DAP/reference | 1.0869 | 0.534 |
43DAP/reference | 1.07409 | 0.873 |
47DAP/reference | 0.90696 | 0.383 |
52DAP/reference | 0.99213 | 0.621 |
57DAP/reference | 1.11485 | 0.468 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83711 | 0.049 |
17DAP/reference | 0.88106 | 0.129 |
27DAP/reference | 0.81787 | 0.045 |
39DAP/reference | 0.87143 | 0.091 |
41DAP/reference | 0.8558 | 0.026 |
42DAP/reference | 0.87586 | 0.073 |
43DAP/reference | 0.85664 | 0.121 |
47DAP/reference | 0.9195 | 0.11 |
52DAP/reference | 0.92632 | 0.156 |
57DAP/reference | 0.87001 | 0.135 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99068 | 0.455 |
17DAP/reference | 1.15863 | 0.443 |
27DAP/reference | 1.45107 | 0.044 |
39DAP/reference | 0.94358 | 0.504 |
41DAP/reference | 1.30433 | 0.257 |
42DAP/reference | 0.88921 | 0.361 |
43DAP/reference | 0.87511 | 0.216 |
47DAP/reference | 0.87555 | 0.01 |
52DAP/reference | 1.40785 | 0.601 |
57DAP/reference | 0.9888 | 0.693 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10663 | 0.966 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.28357 | 0.542 |
51DAP/34DAP | 1.15867 | 0.898 |
52DAP/51DAP | 0.80836 | 0.151 |
53DAP/52DAP | 1.14446 | 0.895 |
55DAP/53DAP | 1.006 | 0.908 |
57DAP/55DAP | 1.2224 | 0.71 |
62DAP/57DAP | 1.10787 | 0.8 |
68DAP/62DAP | 1.13426 | 0.523 |
68DAP/14DAP | 1.12227 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.14725 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 8.82457 | |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.17867 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.93832 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.84858 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.77754 | 0.247 |
IL2-6/WTpooled | 1.21221 | 0.427 |
IL7-5/WTpooled | 0.80962 | 1 |
IL7-3/WTpooled | 0.96931 | 1 |
IL12-4/WTpooled | 1.10284 | 0.557 |
IL1-4/WTpooled | 1.05125 | 1 |
WT/WTpooled | 1.07831 | 0.818 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95735 | 1 |
DC3000/delta hrp 6h | 1.06491 | 1 |
DC3000/delta hrp 12h | 0.92008 | 1 |
DC3000/delta hrp 24h | 1.07057 | 0.673 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.92809 | 1 |
Exp 36h | 0.37295 | 0.449 |
Exp 60h | 0.51296 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.21537 | 0.594 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | 0.6702 | 0.546 |
Var 36h I row2-row1 | 0.96612 | |
Var 36h NI row2-row1 | 0.60042 | 1 |
Var 60h I row2-row1 | 0.81748 | |
Var 60h NI row2-row1 | 1.05892 | 1 |
Time course 0hI-0hNI | 1.5966 | |
Time course 12hI-12hNI | 1.05048 | 0.774 |
Time course 36hI-36hNI | 0.25327 | 0.023 |
Time course 60hI-60hNI | 3.14132 | 0.16 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13819 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 2.784 | 0.178 |
transgenic ySAMdc/azygous control (red) | 0.98062 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.20642 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 4.86844 | 0.105 |
Manapal/WT (break) | 2.94085 | 0.13 |
Manapal/WT (red) | 1.18684 | 1 |
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