Expression of 1-1-5.1.18.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.30666 | 0.681 |
27DAP/17DAP | 0.89197 | 0.754 |
39DAP/27DAP | 1.24501 | 0.894 |
41DAP/39DAP | 0.59959 | 0.114 |
42DAP/41DAP | 1.22097 | 0.691 |
43DAP/42DAP | 0.94419 | 0.89 |
47DAP/43DAP | 0.76429 | 0.276 |
52DAP/47DAP | 0.70955 | 0.297 |
57DAP/52DAP | 1.18151 | 0.96 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94155 | 0.379 |
17DAP/reference | 1.06663 | 0.585 |
27DAP/reference | 0.97556 | 0.61 |
39DAP/reference | 0.98118 | 0.762 |
41DAP/reference | 0.73521 | 0.011 |
42DAP/reference | 0.99999 | 0.645 |
43DAP/reference | 0.8964 | 0.191 |
47DAP/reference | 0.99778 | 0.602 |
52DAP/reference | 1.18775 | 0.242 |
57DAP/reference | 1.05301 | 0.582 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88187 | 0.454 |
27DAP/17DAP | 1.20221 | 0.636 |
39DAP/27DAP | 1.2554 | 0.441 |
41DAP/39DAP | 2.27028 | 0.009 |
42DAP/41DAP | 0.75166 | 0.022 |
43DAP/42DAP | 0.60891 | 0.037 |
47DAP/43DAP | 1.26614 | 0.475 |
52DAP/47DAP | 1.03181 | 0.987 |
57DAP/52DAP | 1.42976 | 0.357 |
57DAP/7DAP | 1.11354 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87964 | 0.183 |
17DAP/reference | 1.00452 | 1 |
27DAP/reference | 0.90333 | 0.125 |
39DAP/reference | 0.95062 | 0.354 |
41DAP/reference | 0.75265 | 0.058 |
42DAP/reference | 0.75758 | 0.011 |
43DAP/reference | 0.90314 | 0.151 |
47DAP/reference | 0.99904 | 1 |
52DAP/reference | 0.89108 | 0.126 |
57DAP/reference | 0.97717 | 0.477 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93469 | 0.362 |
17DAP/reference | 0.87173 | 0.077 |
27DAP/reference | 1.05355 | 0.822 |
39DAP/reference | 1.18348 | 0.489 |
41DAP/reference | 0.98066 | 0.493 |
42DAP/reference | 0.9588 | 0.392 |
43DAP/reference | 1.22008 | 0.352 |
47DAP/reference | 0.88167 | 0.044 |
52DAP/reference | 1.05944 | 0.629 |
57DAP/reference | 1.16299 | 0.387 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13262 | 0.676 |
17DAP/reference | 1.18505 | 0.224 |
27DAP/reference | 0.83746 | 0.034 |
39DAP/reference | 0.90246 | 0.133 |
41DAP/reference | 0.94797 | 0.371 |
42DAP/reference | 0.88655 | 0.172 |
43DAP/reference | 1.1527 | 0.961 |
47DAP/reference | 0.95214 | 0.409 |
52DAP/reference | 1.0507 | 0.871 |
57DAP/reference | 1.04365 | 0.693 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16907 | 0.966 |
26DAP/20DAP | 1.24376 | 0.727 |
34DAP/26DAP | 1.3246 | 0.819 |
51DAP/34DAP | 0.93634 | 0.579 |
52DAP/51DAP | 1.43175 | 0.09 |
53DAP/52DAP | 0.60314 | 0.05 |
55DAP/53DAP | 0.86791 | 0.489 |
57DAP/55DAP | 1.07721 | 0.975 |
62DAP/57DAP | 1.39202 | 0.057 |
68DAP/62DAP | 0.85604 | 0.722 |
68DAP/14DAP | 1.26331 | 0.045 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.53184 | 0.031 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72668 | 0.217 |
Mature Green Tomato/Ripe Tomato | 1.9988 | 0.015 |
Immature Eggplant/Mature Eggplant | 1.85705 | 0.05 |
Ripe Pepper/Ripe Tomato | 4.79626 | 0.258 |
Mature Eggplant/Ripe Tomato | 2.55076 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.53238 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.06161 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.32471 | |
IL2-6/WTpooled | 0.79057 | 0.383 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.02038 | 1 |
IL12-4/WTpooled | 0.94611 | 0.71 |
IL1-4/WTpooled | 1.04704 | 1 |
WT/WTpooled | 1.09371 | 0.805 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1889 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96351 | 1 |
DC3000/delta hrp 6h | 0.93281 | 0.95 |
DC3000/delta hrp 12h | 1.25791 | 1 |
DC3000/delta hrp 24h | 1.10451 | 0.243 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.27733 | 1 |
Exp 36h | 1.71176 | 1 |
Exp 60h | 1.46508 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02948 | 1 |
Var 0h | 0.84426 | 0.98 |
Var 12h I row2-row1 | 0.94174 | 0.856 |
Var 12h NI row2-row1 | 1.64133 | 0.649 |
Var 36h I row2-row1 | 1.18914 | 0.908 |
Var 36h NI row2-row1 | 0.71307 | 0.584 |
Var 60h I row2-row1 | 1.52461 | 1 |
Var 60h NI row2-row1 | 0.86054 | 0.572 |
Time course 0hI-0hNI | 1.4635 | 0.537 |
Time course 12hI-12hNI | 2.43077 | 0.089 |
Time course 36hI-36hNI | 3.27031 | 0.007 |
Time course 60hI-60hNI | 7.80137 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.11346 | 0.36 |
transgenic ySAMdc/azygous control (breaker) | 0.74558 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.93241 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.10255 | 0.037 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.45932 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0655 | 1 |
Manapal/WT (break) | 1.01976 | 1 |
Manapal/WT (red) | N/A | N/A |
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