Expression of 1-1-5.1.18.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.306660.681
27DAP/17DAP0.891970.754
39DAP/27DAP1.245010.894
41DAP/39DAP0.599590.114
42DAP/41DAP1.220970.691
43DAP/42DAP0.944190.89
47DAP/43DAP0.764290.276
52DAP/47DAP0.709550.297
57DAP/52DAP1.181510.96

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.941550.379
17DAP/reference1.066630.585
27DAP/reference0.975560.61
39DAP/reference0.981180.762
41DAP/reference0.735210.011
42DAP/reference0.999990.645
43DAP/reference0.89640.191
47DAP/reference0.997780.602
52DAP/reference1.187750.242
57DAP/reference1.053010.582

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.881870.454
27DAP/17DAP1.202210.636
39DAP/27DAP1.25540.441
41DAP/39DAP2.270280.009
42DAP/41DAP0.751660.022
43DAP/42DAP0.608910.037
47DAP/43DAP1.266140.475
52DAP/47DAP1.031810.987
57DAP/52DAP1.429760.357
57DAP/7DAP1.113541

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.879640.183
17DAP/reference1.004521
27DAP/reference0.903330.125
39DAP/reference0.950620.354
41DAP/reference0.752650.058
42DAP/reference0.757580.011
43DAP/reference0.903140.151
47DAP/reference0.999041
52DAP/reference0.891080.126
57DAP/reference0.977170.477

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.934690.362
17DAP/reference0.871730.077
27DAP/reference1.053550.822
39DAP/reference1.183480.489
41DAP/reference0.980660.493
42DAP/reference0.95880.392
43DAP/reference1.220080.352
47DAP/reference0.881670.044
52DAP/reference1.059440.629
57DAP/reference1.162990.387

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.132620.676
17DAP/reference1.185050.224
27DAP/reference0.837460.034
39DAP/reference0.902460.133
41DAP/reference0.947970.371
42DAP/reference0.886550.172
43DAP/reference1.15270.961
47DAP/reference0.952140.409
52DAP/reference1.05070.871
57DAP/reference1.043650.693

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.169070.966
26DAP/20DAP1.243760.727
34DAP/26DAP1.32460.819
51DAP/34DAP0.936340.579
52DAP/51DAP1.431750.09
53DAP/52DAP0.603140.05
55DAP/53DAP0.867910.489
57DAP/55DAP1.077210.975
62DAP/57DAP1.392020.057
68DAP/62DAP0.856040.722
68DAP/14DAP1.263310.045

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.531840.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.726680.217
Mature Green Tomato/Ripe Tomato1.99880.015
Immature Eggplant/Mature Eggplant1.857050.05
Ripe Pepper/Ripe Tomato4.796260.258
Mature Eggplant/Ripe Tomato2.550760.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.53238
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.06161
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.32471
IL2-6/WTpooled0.790570.383
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.020381
IL12-4/WTpooled0.946110.71
IL1-4/WTpooled1.047041
WT/WTpooled1.093710.805

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.18891

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.963511
DC3000/delta hrp 6h0.932810.95
DC3000/delta hrp 12h1.257911
DC3000/delta hrp 24h1.104510.243

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.277331
Exp 36h1.711761
Exp 60h1.465080.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.029481
Var 0h0.844260.98
Var 12h I row2-row10.941740.856
Var 12h NI row2-row11.641330.649
Var 36h I row2-row11.189140.908
Var 36h NI row2-row10.713070.584
Var 60h I row2-row11.524611
Var 60h NI row2-row10.860540.572
Time course 0hI-0hNI1.46350.537
Time course 12hI-12hNI2.430770.089
Time course 36hI-36hNI3.270310.007
Time course 60hI-60hNI7.801370.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.113460.36
transgenic ySAMdc/azygous control (breaker)0.745580.15
transgenic ySAMdc/azygous control (red)0.932411

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.102550.037

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.459320.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.06551
Manapal/WT (break)1.019761
Manapal/WT (red)N/AN/A