Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.1.18.9

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.0534	0.838
27DAP/17DAP	1.20095	0.793
39DAP/27DAP	0.84437	0.544
41DAP/39DAP	1.11771	0.597
42DAP/41DAP	0.88508	1
43DAP/42DAP	0.76751	0.599
47DAP/43DAP	1.07402	1
52DAP/47DAP	0.92329	0.777
57DAP/52DAP	0.98548	0.976

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.04032	0.846
17DAP/reference	1.1115	0.122
27DAP/reference	1.0818	0.211
39DAP/reference	1.06181	0.318
41DAP/reference	1.0207	1
42DAP/reference	0.91568	0.015
43DAP/reference	0.92734	0.41
47DAP/reference	1.07897	0.233
52DAP/reference	1.14405	0.072
57DAP/reference	1.59645	0.009

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.91681	0.388
27DAP/17DAP	1.111	0.74
39DAP/27DAP	1.01804	0.845
41DAP/39DAP	1.23817	0.781
42DAP/41DAP	1.07591	0.727
43DAP/42DAP	1.0685	0.585
47DAP/43DAP	1.06581	0.901
52DAP/47DAP	0.9829	0.913
57DAP/52DAP	1.01019	1
57DAP/7DAP	0.87539	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.38652	0.15
17DAP/reference	1.45129	0.016
27DAP/reference	1.21918	0.301
39DAP/reference	1.29514	0.016
41DAP/reference	1.36253	0.165
42DAP/reference	1.27062	0.308
43DAP/reference	1.50976	0.083
47DAP/reference	1.20301	0.468
52DAP/reference	1.43323	0.012
57DAP/reference	1.61908	0.027

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98828	0.756
17DAP/reference	0.77445	0.004
27DAP/reference	0.81352	0.054
39DAP/reference	0.89233	0.093
41DAP/reference	0.8472	0.05
42DAP/reference	0.96246	0.433
43DAP/reference	0.90213	0.277
47DAP/reference	0.91267	0.051
52DAP/reference	0.83991	0.004
57DAP/reference	0.87694	0.046

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96797	0.566
17DAP/reference	1.14244	0.39
27DAP/reference	1.27466	0.062
39DAP/reference	1.42293	0.053
41DAP/reference	1.19058	0.357
42DAP/reference	0.8427	0.287
43DAP/reference	1.06142	0.744
47DAP/reference	0.96169	0.409
52DAP/reference	1.13612	0.428
57DAP/reference	1.43684	0.049

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.01106	1
26DAP/20DAP	0.94465	1
34DAP/26DAP	1.00255	1
51DAP/34DAP	0.96322	0.743
52DAP/51DAP	1.19184	0.077
53DAP/52DAP	0.95701	0.803
55DAP/53DAP	1.00143	0.925
57DAP/55DAP	0.9892	0.854
62DAP/57DAP	1.02219	0.935
68DAP/62DAP	0.89146	0.641
68DAP/14DAP	0.74813	0.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.7912	0.097

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.97677	0.635
Mature Green Tomato/Ripe Tomato	1.4593
Immature Eggplant/Mature Eggplant	1.08919	0.334
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	1.94977

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.97067	0.961
1-1-2/M82	0.86258	1
12-2/M82	1.02581	1
12-4/M82	1.00865	1
1-3/M82	0.97438	1
2-1-1/M82	1.13999	0.689
2-1/M82	1.1554	1
2-6/M82	0.95595	1
3-2/M82	1.1181
4-1-1/M82	1.00572	1
4-1/M82	0.99857
4-3-2/M82	0.93843
4-3/M82	0.99616	1
5-3/M82	0.97145	1
6-2/M82	0.94156	1
6-3/M82	1.02336	1
7-1/M82	0.97311	1
7-2/M82	0.98258	0.796
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	N/A	N/A
IL1-4/WTpooled	N/A	N/A
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.93261	1

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.97427	1
DC3000/delta hrp 6h	1.71604	1
DC3000/delta hrp 12h	1.33106	1
DC3000/delta hrp 24h	1.05748	0.62

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.1217	0.408
DC3000 delta B/DC3000 delta AB	0.97475	0.787

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.02742	1
Var 0h	2.23078	0.258
Var 12h I row2-row1	1.13105	0.654
Var 12h NI row2-row1	0.86717	0.394
Var 36h I row2-row1	0.89571	0.575
Var 36h NI row2-row1	1.05312	1
Var 60h I row2-row1	1.10578	0.543
Var 60h NI row2-row1	1.19062	0.904
Time course 0hI-0hNI	0.9321	0.582
Time course 12hI-12hNI	0.96723	0.761
Time course 36hI-36hNI	0.96589	0.29
Time course 60hI-60hNI	0.92047	0.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.12866	0.862
transgenic ySAMdc/azygous control (breaker)	1.47183	1
transgenic ySAMdc/azygous control (red)	1.21455	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.96893	0.153

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.11717	0.229

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	0.89473	1
Manapal/WT (red)	0.87799	0.728