Expression of 1-1-5.1.19.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.110680.646
27DAP/17DAP1.083480.883
39DAP/27DAP1.094370.91
41DAP/39DAP0.70190.103
42DAP/41DAP1.116790.899
43DAP/42DAP1.046391
47DAP/43DAP0.683040.177
52DAP/47DAP1.067150.91
57DAP/52DAP1.133250.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.125680.105
17DAP/reference0.982540.777
27DAP/reference1.007470.904
39DAP/reference0.893870.404
41DAP/reference1.212130.05
42DAP/reference0.804470.041
43DAP/reference0.864380.211
47DAP/reference1.097141
52DAP/reference1.104870.912
57DAP/reference1.236440.355

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.886110.251
27DAP/17DAP1.071260.957
39DAP/27DAP1.024350.779
41DAP/39DAP1.069871
42DAP/41DAP1.121070.495
43DAP/42DAP0.802970.063
47DAP/43DAP0.976740.902
52DAP/47DAP1.053110.785
57DAP/52DAP1.081640.611
57DAP/7DAP0.67068

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.035820.857
17DAP/reference1.131590.574
27DAP/reference1.164360.197
39DAP/reference1.228830.101
41DAP/reference1.358720.121
42DAP/reference1.124560.889
43DAP/reference1.04291
47DAP/reference1.14940.235
52DAP/reference1.256210.041
57DAP/reference1.073290.698

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.659310.023
17DAP/reference1.040950.747
27DAP/reference0.957740.519
39DAP/reference0.98430.539
41DAP/reference1.217260.629
42DAP/reference0.898810.392
43DAP/reference0.777110.028
47DAP/reference0.9220.302
52DAP/reference1.09240.789
57DAP/reference1.041960.908

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.921190.391
17DAP/reference1.127660.9
27DAP/reference0.929840.465
39DAP/reference1.052980.563
41DAP/reference1.241980.306
42DAP/reference0.911270.445
43DAP/reference1.265550.349
47DAP/reference0.802340.296
52DAP/reference1.426250.082
57DAP/reference1.150451

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.127870.966
26DAP/20DAP1.328910.22
34DAP/26DAP0.938010.753
51DAP/34DAP1.284930.159
52DAP/51DAP0.935411
53DAP/52DAP1.268120.204
55DAP/53DAP0.804970.021
57DAP/55DAP0.906540.56
62DAP/57DAP0.660720.016
68DAP/62DAP1.34450.22
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.608770.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.386720.036
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.47456
Mature Eggplant/Ripe Tomato1.24210.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.091431
1-1-2/M820.95831
12-2/M820.735350.955
12-4/M820.950941
1-3/M821.644650.26
2-1-1/M821.050160.457
2-1/M820.864590.74
2-6/M821.022441
3-2/M821.02134
4-1-1/M821.225891
4-1/M820.73194
4-3-2/M821.085021
4-3/M821.465240.268
5-3/M821.11171
6-2/M821.846360.198
6-3/M821.129651
7-1/M821.50313
7-2/M821.664160.324
9-3-2/M821.079061

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.93871
IL2-6/WTpooled0.964851
IL7-5/WTpooled1.192630.792
IL7-3/WTpooled1.219681
IL12-4/WTpooled0.828230.566
IL1-4/WTpooled1.211491
WT/WTpooled0.88681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.061820.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.004151
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.916550.025

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.876060.057
DC3000 delta B/DC3000 delta AB1.07390.516

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977841
Var 0h1.00631
Var 12h I row2-row11.036081
Var 12h NI row2-row11.0791
Var 36h I row2-row11.00731
Var 36h NI row2-row11.161581
Var 60h I row2-row10.795030.439
Var 60h NI row2-row10.987261
Time course 0hI-0hNI0.933640.423
Time course 12hI-12hNI1.019110.798
Time course 36hI-36hNI1.108910.316
Time course 60hI-60hNI1.074850.096

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)1.443450.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.138990.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.070861