Expression of 1-1-5.1.19.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11068 | 0.646 |
27DAP/17DAP | 1.08348 | 0.883 |
39DAP/27DAP | 1.09437 | 0.91 |
41DAP/39DAP | 0.7019 | 0.103 |
42DAP/41DAP | 1.11679 | 0.899 |
43DAP/42DAP | 1.04639 | 1 |
47DAP/43DAP | 0.68304 | 0.177 |
52DAP/47DAP | 1.06715 | 0.91 |
57DAP/52DAP | 1.13325 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12568 | 0.105 |
17DAP/reference | 0.98254 | 0.777 |
27DAP/reference | 1.00747 | 0.904 |
39DAP/reference | 0.89387 | 0.404 |
41DAP/reference | 1.21213 | 0.05 |
42DAP/reference | 0.80447 | 0.041 |
43DAP/reference | 0.86438 | 0.211 |
47DAP/reference | 1.09714 | 1 |
52DAP/reference | 1.10487 | 0.912 |
57DAP/reference | 1.23644 | 0.355 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88611 | 0.251 |
27DAP/17DAP | 1.07126 | 0.957 |
39DAP/27DAP | 1.02435 | 0.779 |
41DAP/39DAP | 1.06987 | 1 |
42DAP/41DAP | 1.12107 | 0.495 |
43DAP/42DAP | 0.80297 | 0.063 |
47DAP/43DAP | 0.97674 | 0.902 |
52DAP/47DAP | 1.05311 | 0.785 |
57DAP/52DAP | 1.08164 | 0.611 |
57DAP/7DAP | 0.67068 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03582 | 0.857 |
17DAP/reference | 1.13159 | 0.574 |
27DAP/reference | 1.16436 | 0.197 |
39DAP/reference | 1.22883 | 0.101 |
41DAP/reference | 1.35872 | 0.121 |
42DAP/reference | 1.12456 | 0.889 |
43DAP/reference | 1.0429 | 1 |
47DAP/reference | 1.1494 | 0.235 |
52DAP/reference | 1.25621 | 0.041 |
57DAP/reference | 1.07329 | 0.698 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.65931 | 0.023 |
17DAP/reference | 1.04095 | 0.747 |
27DAP/reference | 0.95774 | 0.519 |
39DAP/reference | 0.9843 | 0.539 |
41DAP/reference | 1.21726 | 0.629 |
42DAP/reference | 0.89881 | 0.392 |
43DAP/reference | 0.77711 | 0.028 |
47DAP/reference | 0.922 | 0.302 |
52DAP/reference | 1.0924 | 0.789 |
57DAP/reference | 1.04196 | 0.908 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92119 | 0.391 |
17DAP/reference | 1.12766 | 0.9 |
27DAP/reference | 0.92984 | 0.465 |
39DAP/reference | 1.05298 | 0.563 |
41DAP/reference | 1.24198 | 0.306 |
42DAP/reference | 0.91127 | 0.445 |
43DAP/reference | 1.26555 | 0.349 |
47DAP/reference | 0.80234 | 0.296 |
52DAP/reference | 1.42625 | 0.082 |
57DAP/reference | 1.15045 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12787 | 0.966 |
26DAP/20DAP | 1.32891 | 0.22 |
34DAP/26DAP | 0.93801 | 0.753 |
51DAP/34DAP | 1.28493 | 0.159 |
52DAP/51DAP | 0.93541 | 1 |
53DAP/52DAP | 1.26812 | 0.204 |
55DAP/53DAP | 0.80497 | 0.021 |
57DAP/55DAP | 0.90654 | 0.56 |
62DAP/57DAP | 0.66072 | 0.016 |
68DAP/62DAP | 1.3445 | 0.22 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.60877 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.38672 | 0.036 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.47456 | |
Mature Eggplant/Ripe Tomato | 1.2421 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.09143 | 1 |
1-1-2/M82 | 0.9583 | 1 |
12-2/M82 | 0.73535 | 0.955 |
12-4/M82 | 0.95094 | 1 |
1-3/M82 | 1.64465 | 0.26 |
2-1-1/M82 | 1.05016 | 0.457 |
2-1/M82 | 0.86459 | 0.74 |
2-6/M82 | 1.02244 | 1 |
3-2/M82 | 1.02134 | |
4-1-1/M82 | 1.22589 | 1 |
4-1/M82 | 0.73194 | |
4-3-2/M82 | 1.08502 | 1 |
4-3/M82 | 1.46524 | 0.268 |
5-3/M82 | 1.1117 | 1 |
6-2/M82 | 1.84636 | 0.198 |
6-3/M82 | 1.12965 | 1 |
7-1/M82 | 1.50313 | |
7-2/M82 | 1.66416 | 0.324 |
9-3-2/M82 | 1.07906 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.9387 | 1 |
IL2-6/WTpooled | 0.96485 | 1 |
IL7-5/WTpooled | 1.19263 | 0.792 |
IL7-3/WTpooled | 1.21968 | 1 |
IL12-4/WTpooled | 0.82823 | 0.566 |
IL1-4/WTpooled | 1.21149 | 1 |
WT/WTpooled | 0.8868 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06182 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00415 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 1.91655 | 0.025 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.87606 | 0.057 |
DC3000 delta B/DC3000 delta AB | 1.0739 | 0.516 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97784 | 1 |
Var 0h | 1.0063 | 1 |
Var 12h I row2-row1 | 1.03608 | 1 |
Var 12h NI row2-row1 | 1.079 | 1 |
Var 36h I row2-row1 | 1.0073 | 1 |
Var 36h NI row2-row1 | 1.16158 | 1 |
Var 60h I row2-row1 | 0.79503 | 0.439 |
Var 60h NI row2-row1 | 0.98726 | 1 |
Time course 0hI-0hNI | 0.93364 | 0.423 |
Time course 12hI-12hNI | 1.01911 | 0.798 |
Time course 36hI-36hNI | 1.10891 | 0.316 |
Time course 60hI-60hNI | 1.07485 | 0.096 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 1.44345 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.13899 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.07086 | 1 |
|
|