Expression of 1-1-5.1.19.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.073450.725
27DAP/17DAP1.21670.804
39DAP/27DAP0.998650.798
41DAP/39DAP1.021850.929
42DAP/41DAP1.113510.886
43DAP/42DAP1.043381
47DAP/43DAP1.042660.926
52DAP/47DAP0.895960.694
57DAP/52DAP1.112280.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.085920.35
17DAP/reference1.111440.017
27DAP/reference0.962420.395
39DAP/reference1.029050.534
41DAP/reference1.161090.038
42DAP/reference1.056940.252
43DAP/reference1.017840.838
47DAP/reference1.040880.448
52DAP/reference0.974390.427
57DAP/reference0.896510.025

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.970230.56
27DAP/17DAP1.017550.942
39DAP/27DAP1.019630.758
41DAP/39DAP1.039590.799
42DAP/41DAP0.981060.784
43DAP/42DAP1.055910.176
47DAP/43DAP1.00750.941
52DAP/47DAP1.008580.973
57DAP/52DAP0.927540.391
57DAP/7DAP0.970131

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.087660.638
17DAP/reference1.220170.064
27DAP/reference1.126110.246
39DAP/reference1.374750.048
41DAP/reference1.312340.08
42DAP/reference1.386030.132
43DAP/reference1.247550.048
47DAP/reference1.008111
52DAP/reference1.293330.046
57DAP/reference1.150340.035

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.055120.695
17DAP/reference1.242920.061
27DAP/reference1.104030.239
39DAP/reference1.123250.355
41DAP/reference1.012640.749
42DAP/reference1.009181
43DAP/reference1.18910.062
47DAP/reference1.015050.943
52DAP/reference1.219290.009
57DAP/reference1.305810.023

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.306660.043
17DAP/reference1.027490.912
27DAP/reference1.120680.088
39DAP/reference1.107470.245
41DAP/reference1.176370.093
42DAP/reference1.066380.893
43DAP/reference1.245740.259
47DAP/reference0.975790.509
52DAP/reference1.247530.324
57DAP/reference0.832490.136

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.008141
26DAP/20DAP1.053940.839
34DAP/26DAP1.021561
51DAP/34DAP1.005930.962
52DAP/51DAP0.968931
53DAP/52DAP1.039430.768
55DAP/53DAP1.044520.848
57DAP/55DAP1.015660.914
62DAP/57DAP0.84570.28
68DAP/62DAP0.903110.579
68DAP/14DAP0.844290.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.866920.048

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.070431
Immature Eggplant/Mature Eggplant1.078260.528
Ripe Pepper/Ripe Tomato0.621960.224
Mature Eggplant/Ripe Tomato0.654780.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.074450.742
1-1-2/M820.953091
12-2/M820.96430.639
12-4/M820.959661
1-3/M820.928110.501
2-1-1/M821.043220.457
2-1/M821.296411
2-6/M820.978351
3-2/M820.971351
4-1-1/M821.014071
4-1/M821.061091
4-3-2/M820.911470.698
4-3/M820.911940.72
5-3/M821.018151
6-2/M821.01241
6-3/M821.088631
7-1/M820.94291
7-2/M821.020961
9-3-2/M820.942230.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.611520.277
IL2-6/WTpooled0.929841
IL7-5/WTpooled1.053441
IL7-3/WTpooled1.576561
IL12-4/WTpooled0.956650.554
IL1-4/WTpooled1.33150.426
WT/WTpooled0.921311

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.155680.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.939111
DC3000/delta hrp 6h0.99510.95
DC3000/delta hrp 12h1.054011
DC3000/delta hrp 24h0.977470.887

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.106130.102
DC3000 delta B/DC3000 delta AB1.106290.318

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.899761
Exp 36h1.305181
Exp 60h1.08621

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001711
Var 0h0.857690.933
Var 12h I row2-row11.110130.235
Var 12h NI row2-row10.942250.713
Var 36h I row2-row10.9981
Var 36h NI row2-row11.034521
Var 60h I row2-row11.190211
Var 60h NI row2-row11.128850.904
Time course 0hI-0hNI1.028650.867
Time course 12hI-12hNI0.987810.95
Time course 36hI-36hNI1.049930.166
Time course 60hI-60hNI1.054840.302

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.996841
transgenic ySAMdc/azygous control (breaker)1.101290.248
transgenic ySAMdc/azygous control (red)0.956511

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.924740.122

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.179791

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.809220.216