Expression of 1-1-5.1.19.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.289420.359
27DAP/17DAP2.605280.688
39DAP/27DAP1.388530.307
41DAP/39DAP1.125170.473
42DAP/41DAP0.962621
43DAP/42DAP1.274620.546
47DAP/43DAP0.661640.151
52DAP/47DAP0.725510.461
57DAP/52DAP1.708080.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.964470.489
17DAP/reference1.114790.017
27DAP/reference0.992060.763
39DAP/reference0.960150.35
41DAP/reference1.227570.014
42DAP/reference1.00040.587
43DAP/reference1.038210.812
47DAP/reference1.067080.419
52DAP/reference1.10480.158
57DAP/reference0.875460.036

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.870680.26
27DAP/17DAP1.201130.61
39DAP/27DAP0.859370.4
41DAP/39DAP1.000391
42DAP/41DAP1.59550.365
43DAP/42DAP1.168510.664
47DAP/43DAP1.305970.63
52DAP/47DAP1.227590.492
57DAP/52DAP1.239220.352
57DAP/7DAP1.06221

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.273530.091
17DAP/reference1.513920.016
27DAP/reference1.253370.197
39DAP/reference1.341110.018
41DAP/reference1.538280.024
42DAP/reference1.380960.03
43DAP/reference1.356520.007
47DAP/reference1.264810.191
52DAP/reference1.20380.098
57DAP/reference1.373480.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.0040.831
17DAP/reference1.153310.058
27DAP/reference1.131730.225
39DAP/reference1.02861
41DAP/reference1.078250.562
42DAP/reference0.921090.121
43DAP/reference1.206520.093
47DAP/reference1.032230.751
52DAP/reference1.181570.135
57DAP/reference1.326980.155

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.330090.031
17DAP/reference1.071020.638
27DAP/reference1.282520.042
39DAP/reference1.218010.02
41DAP/reference1.23130.05
42DAP/reference1.382450.03
43DAP/reference1.191580.139
47DAP/reference1.141570.424
52DAP/reference1.156920.324
57DAP/reference1.118240.378

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.447090.85
26DAP/20DAP0.900371
34DAP/26DAP1.428310.078
51DAP/34DAP0.728570.428
52DAP/51DAP1.21780.954
53DAP/52DAP1.05170.99
55DAP/53DAP0.924580.735
57DAP/55DAP1.090631
62DAP/57DAP0.896680.871
68DAP/62DAP0.941640.81
68DAP/14DAP0.909651

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.985290.774

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant2.67171
Ripe Pepper/Ripe Tomato0.422430.224
Mature Eggplant/Ripe Tomato0.08505

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.87433
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.008291
IL7-3/WTpooled1.26187
IL12-4/WTpooled1.1126
IL1-4/WTpooled0.731480.415
WT/WTpooled1.202920.911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.82866
DC3000/delta hrp 6h1.09617
DC3000/delta hrp 12h1.094271
DC3000/delta hrp 24h1.391671

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.967951
Exp 36h0.669240.434
Exp 60h1.230630.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.37969
Var 0h0.947590.457
Var 12h I row2-row10.91530.948
Var 12h NI row2-row10.87465
Var 36h I row2-row10.90744
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row11.15413
Var 60h NI row2-row10.89981
Time course 0hI-0hNI1.031350.867
Time course 12hI-12hNI0.917540.687
Time course 36hI-36hNI0.668160.121
Time course 60hI-60hNI0.854911

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.052680.654
transgenic ySAMdc/azygous control (breaker)1.080361
transgenic ySAMdc/azygous control (red)0.967781

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.886620.133

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.891910.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A