Expression of 1-1-5.1.19.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28942 | 0.359 |
27DAP/17DAP | 2.60528 | 0.688 |
39DAP/27DAP | 1.38853 | 0.307 |
41DAP/39DAP | 1.12517 | 0.473 |
42DAP/41DAP | 0.96262 | 1 |
43DAP/42DAP | 1.27462 | 0.546 |
47DAP/43DAP | 0.66164 | 0.151 |
52DAP/47DAP | 0.72551 | 0.461 |
57DAP/52DAP | 1.70808 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96447 | 0.489 |
17DAP/reference | 1.11479 | 0.017 |
27DAP/reference | 0.99206 | 0.763 |
39DAP/reference | 0.96015 | 0.35 |
41DAP/reference | 1.22757 | 0.014 |
42DAP/reference | 1.0004 | 0.587 |
43DAP/reference | 1.03821 | 0.812 |
47DAP/reference | 1.06708 | 0.419 |
52DAP/reference | 1.1048 | 0.158 |
57DAP/reference | 0.87546 | 0.036 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87068 | 0.26 |
27DAP/17DAP | 1.20113 | 0.61 |
39DAP/27DAP | 0.85937 | 0.4 |
41DAP/39DAP | 1.00039 | 1 |
42DAP/41DAP | 1.5955 | 0.365 |
43DAP/42DAP | 1.16851 | 0.664 |
47DAP/43DAP | 1.30597 | 0.63 |
52DAP/47DAP | 1.22759 | 0.492 |
57DAP/52DAP | 1.23922 | 0.352 |
57DAP/7DAP | 1.0622 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27353 | 0.091 |
17DAP/reference | 1.51392 | 0.016 |
27DAP/reference | 1.25337 | 0.197 |
39DAP/reference | 1.34111 | 0.018 |
41DAP/reference | 1.53828 | 0.024 |
42DAP/reference | 1.38096 | 0.03 |
43DAP/reference | 1.35652 | 0.007 |
47DAP/reference | 1.26481 | 0.191 |
52DAP/reference | 1.2038 | 0.098 |
57DAP/reference | 1.37348 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.004 | 0.831 |
17DAP/reference | 1.15331 | 0.058 |
27DAP/reference | 1.13173 | 0.225 |
39DAP/reference | 1.0286 | 1 |
41DAP/reference | 1.07825 | 0.562 |
42DAP/reference | 0.92109 | 0.121 |
43DAP/reference | 1.20652 | 0.093 |
47DAP/reference | 1.03223 | 0.751 |
52DAP/reference | 1.18157 | 0.135 |
57DAP/reference | 1.32698 | 0.155 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33009 | 0.031 |
17DAP/reference | 1.07102 | 0.638 |
27DAP/reference | 1.28252 | 0.042 |
39DAP/reference | 1.21801 | 0.02 |
41DAP/reference | 1.2313 | 0.05 |
42DAP/reference | 1.38245 | 0.03 |
43DAP/reference | 1.19158 | 0.139 |
47DAP/reference | 1.14157 | 0.424 |
52DAP/reference | 1.15692 | 0.324 |
57DAP/reference | 1.11824 | 0.378 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.44709 | 0.85 |
26DAP/20DAP | 0.90037 | 1 |
34DAP/26DAP | 1.42831 | 0.078 |
51DAP/34DAP | 0.72857 | 0.428 |
52DAP/51DAP | 1.2178 | 0.954 |
53DAP/52DAP | 1.0517 | 0.99 |
55DAP/53DAP | 0.92458 | 0.735 |
57DAP/55DAP | 1.09063 | 1 |
62DAP/57DAP | 0.89668 | 0.871 |
68DAP/62DAP | 0.94164 | 0.81 |
68DAP/14DAP | 0.90965 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98529 | 0.774 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 2.67171 | |
Ripe Pepper/Ripe Tomato | 0.42243 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.08505 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87433 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.00829 | 1 |
IL7-3/WTpooled | 1.26187 | |
IL12-4/WTpooled | 1.1126 | |
IL1-4/WTpooled | 0.73148 | 0.415 |
WT/WTpooled | 1.20292 | 0.911 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.82866 | |
DC3000/delta hrp 6h | 1.09617 | |
DC3000/delta hrp 12h | 1.09427 | 1 |
DC3000/delta hrp 24h | 1.39167 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96795 | 1 |
Exp 36h | 0.66924 | 0.434 |
Exp 60h | 1.23063 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.37969 | |
Var 0h | 0.94759 | 0.457 |
Var 12h I row2-row1 | 0.9153 | 0.948 |
Var 12h NI row2-row1 | 0.87465 | |
Var 36h I row2-row1 | 0.90744 | |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | 1.15413 | |
Var 60h NI row2-row1 | 0.8998 | 1 |
Time course 0hI-0hNI | 1.03135 | 0.867 |
Time course 12hI-12hNI | 0.91754 | 0.687 |
Time course 36hI-36hNI | 0.66816 | 0.121 |
Time course 60hI-60hNI | 0.85491 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05268 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 1.08036 | 1 |
transgenic ySAMdc/azygous control (red) | 0.96778 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.88662 | 0.133 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89191 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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