Expression of 1-1-5.1.19.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.889260.389
27DAP/17DAP0.94620.899
39DAP/27DAP1.348080.289
41DAP/39DAP0.771080.213
42DAP/41DAP1.1260.899
43DAP/42DAP1.034111
47DAP/43DAP0.906530.671
52DAP/47DAP0.921450.742
57DAP/52DAP1.436310.692

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.34910.01
17DAP/reference1.48690.012
27DAP/reference1.235530.054
39DAP/reference1.234940.262
41DAP/reference1.575570.023
42DAP/reference1.282330.015
43DAP/reference1.103510.287
47DAP/reference1.452330.001
52DAP/reference1.614320.011
57DAP/reference1.28140.021

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.042710.675
27DAP/17DAP1.050850.863
39DAP/27DAP1.161970.241
41DAP/39DAP1.079420.719
42DAP/41DAP0.915870.315
43DAP/42DAP1.188280.022
47DAP/43DAP1.078920.749
52DAP/47DAP1.057090.831
57DAP/52DAP1.079790.598
57DAP/7DAP1.054781

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.681930.026
17DAP/reference1.573410.01
27DAP/reference2.238830.007
39DAP/reference1.854620.005
41DAP/reference1.944830.01
42DAP/reference2.007480.013
43DAP/reference2.199740.006
47DAP/reference1.694020.062
52DAP/reference2.096110.008
57DAP/reference1.924990.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.950480.532
17DAP/reference1.167030.25
27DAP/reference1.318840.052
39DAP/reference1.171260.401
41DAP/reference1.312110.063
42DAP/reference1.186730.359
43DAP/reference1.174840.15
47DAP/reference1.221110.037
52DAP/reference1.085230.702
57DAP/reference0.9230.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.255260.251
17DAP/reference1.104530.657
27DAP/reference1.269590.041
39DAP/reference1.474940.008
41DAP/reference1.340220.013
42DAP/reference1.86820.01
43DAP/reference1.421760.027
47DAP/reference1.353410.022
52DAP/reference1.985630.077
57DAP/reference1.414660.378

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.191880.966
26DAP/20DAP1.958970.162
34DAP/26DAP0.83520.431
51DAP/34DAP1.457710.056
52DAP/51DAP0.863050.151
53DAP/52DAP0.991170.96
55DAP/53DAP0.824810.029
57DAP/55DAP0.729540.053
62DAP/57DAP0.983710.994
68DAP/62DAP1.006080.834
68DAP/14DAP0.966151

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.939490.443

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.280530.176
Mature Green Tomato/Ripe Tomato0.861680.2
Immature Eggplant/Mature Eggplant0.46802
Ripe Pepper/Ripe Tomato1.37999
Mature Eggplant/Ripe Tomato0.81971

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.313010.536
1-1-2/M821.215030.977
12-2/M821.015561
12-4/M821.196691
1-3/M822.503130.277
2-1-1/M821.140570.764
2-1/M820.884120.74
2-6/M820.794760.501
3-2/M821.054190.426
4-1-1/M820.957531
4-1/M821.040271
4-3-2/M821.5702
4-3/M821.349281
5-3/M821.121181
6-2/M821.314381
6-3/M821.143331
7-1/M821.071261
7-2/M821.343690.385
9-3-2/M821.282681

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.137740.493
IL2-6/WTpooled1.084290.659
IL7-5/WTpooled1.092670.792
IL7-3/WTpooled1.030571
IL12-4/WTpooled1.061670.785
IL1-4/WTpooled0.955090.834
WT/WTpooled1.023541

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.28290.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.031360.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.028631
DC3000/delta hrp 24h1.11770.264

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.224970.053
DC3000 delta B/DC3000 delta AB1.153770.22

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.015131
Var 0h0.487931
Var 12h I row2-row11.021530.795
Var 12h NI row2-row10.98571
Var 36h I row2-row11.127590.304
Var 36h NI row2-row10.966310.743
Var 60h I row2-row11.028221
Var 60h NI row2-row11.119250.904
Time course 0hI-0hNI0.984920.961
Time course 12hI-12hNI1.023660.762
Time course 36hI-36hNI1.125890.056
Time course 60hI-60hNI1.215220.096

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.867660.391
transgenic ySAMdc/azygous control (breaker)1.016571
transgenic ySAMdc/azygous control (red)0.942931

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.032990.587

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.990521

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.841970.172
Manapal/WT (break)1.142490.381
Manapal/WT (red)0.798960.242