Expression of 1-1-5.1.19.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88926 | 0.389 |
27DAP/17DAP | 0.9462 | 0.899 |
39DAP/27DAP | 1.34808 | 0.289 |
41DAP/39DAP | 0.77108 | 0.213 |
42DAP/41DAP | 1.126 | 0.899 |
43DAP/42DAP | 1.03411 | 1 |
47DAP/43DAP | 0.90653 | 0.671 |
52DAP/47DAP | 0.92145 | 0.742 |
57DAP/52DAP | 1.43631 | 0.692 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3491 | 0.01 |
17DAP/reference | 1.4869 | 0.012 |
27DAP/reference | 1.23553 | 0.054 |
39DAP/reference | 1.23494 | 0.262 |
41DAP/reference | 1.57557 | 0.023 |
42DAP/reference | 1.28233 | 0.015 |
43DAP/reference | 1.10351 | 0.287 |
47DAP/reference | 1.45233 | 0.001 |
52DAP/reference | 1.61432 | 0.011 |
57DAP/reference | 1.2814 | 0.021 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04271 | 0.675 |
27DAP/17DAP | 1.05085 | 0.863 |
39DAP/27DAP | 1.16197 | 0.241 |
41DAP/39DAP | 1.07942 | 0.719 |
42DAP/41DAP | 0.91587 | 0.315 |
43DAP/42DAP | 1.18828 | 0.022 |
47DAP/43DAP | 1.07892 | 0.749 |
52DAP/47DAP | 1.05709 | 0.831 |
57DAP/52DAP | 1.07979 | 0.598 |
57DAP/7DAP | 1.05478 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.68193 | 0.026 |
17DAP/reference | 1.57341 | 0.01 |
27DAP/reference | 2.23883 | 0.007 |
39DAP/reference | 1.85462 | 0.005 |
41DAP/reference | 1.94483 | 0.01 |
42DAP/reference | 2.00748 | 0.013 |
43DAP/reference | 2.19974 | 0.006 |
47DAP/reference | 1.69402 | 0.062 |
52DAP/reference | 2.09611 | 0.008 |
57DAP/reference | 1.92499 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95048 | 0.532 |
17DAP/reference | 1.16703 | 0.25 |
27DAP/reference | 1.31884 | 0.052 |
39DAP/reference | 1.17126 | 0.401 |
41DAP/reference | 1.31211 | 0.063 |
42DAP/reference | 1.18673 | 0.359 |
43DAP/reference | 1.17484 | 0.15 |
47DAP/reference | 1.22111 | 0.037 |
52DAP/reference | 1.08523 | 0.702 |
57DAP/reference | 0.923 | 0.226 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25526 | 0.251 |
17DAP/reference | 1.10453 | 0.657 |
27DAP/reference | 1.26959 | 0.041 |
39DAP/reference | 1.47494 | 0.008 |
41DAP/reference | 1.34022 | 0.013 |
42DAP/reference | 1.8682 | 0.01 |
43DAP/reference | 1.42176 | 0.027 |
47DAP/reference | 1.35341 | 0.022 |
52DAP/reference | 1.98563 | 0.077 |
57DAP/reference | 1.41466 | 0.378 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.19188 | 0.966 |
26DAP/20DAP | 1.95897 | 0.162 |
34DAP/26DAP | 0.8352 | 0.431 |
51DAP/34DAP | 1.45771 | 0.056 |
52DAP/51DAP | 0.86305 | 0.151 |
53DAP/52DAP | 0.99117 | 0.96 |
55DAP/53DAP | 0.82481 | 0.029 |
57DAP/55DAP | 0.72954 | 0.053 |
62DAP/57DAP | 0.98371 | 0.994 |
68DAP/62DAP | 1.00608 | 0.834 |
68DAP/14DAP | 0.96615 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93949 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.28053 | 0.176 |
Mature Green Tomato/Ripe Tomato | 0.86168 | 0.2 |
Immature Eggplant/Mature Eggplant | 0.46802 | |
Ripe Pepper/Ripe Tomato | 1.37999 | |
Mature Eggplant/Ripe Tomato | 0.8197 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.31301 | 0.536 |
1-1-2/M82 | 1.21503 | 0.977 |
12-2/M82 | 1.01556 | 1 |
12-4/M82 | 1.19669 | 1 |
1-3/M82 | 2.50313 | 0.277 |
2-1-1/M82 | 1.14057 | 0.764 |
2-1/M82 | 0.88412 | 0.74 |
2-6/M82 | 0.79476 | 0.501 |
3-2/M82 | 1.05419 | 0.426 |
4-1-1/M82 | 0.95753 | 1 |
4-1/M82 | 1.04027 | 1 |
4-3-2/M82 | 1.5702 | |
4-3/M82 | 1.34928 | 1 |
5-3/M82 | 1.12118 | 1 |
6-2/M82 | 1.31438 | 1 |
6-3/M82 | 1.14333 | 1 |
7-1/M82 | 1.07126 | 1 |
7-2/M82 | 1.34369 | 0.385 |
9-3-2/M82 | 1.28268 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.13774 | 0.493 |
IL2-6/WTpooled | 1.08429 | 0.659 |
IL7-5/WTpooled | 1.09267 | 0.792 |
IL7-3/WTpooled | 1.03057 | 1 |
IL12-4/WTpooled | 1.06167 | 0.785 |
IL1-4/WTpooled | 0.95509 | 0.834 |
WT/WTpooled | 1.02354 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.2829 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03136 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.02863 | 1 |
DC3000/delta hrp 24h | 1.1177 | 0.264 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.22497 | 0.053 |
DC3000 delta B/DC3000 delta AB | 1.15377 | 0.22 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01513 | 1 |
Var 0h | 0.48793 | 1 |
Var 12h I row2-row1 | 1.02153 | 0.795 |
Var 12h NI row2-row1 | 0.9857 | 1 |
Var 36h I row2-row1 | 1.12759 | 0.304 |
Var 36h NI row2-row1 | 0.96631 | 0.743 |
Var 60h I row2-row1 | 1.02822 | 1 |
Var 60h NI row2-row1 | 1.11925 | 0.904 |
Time course 0hI-0hNI | 0.98492 | 0.961 |
Time course 12hI-12hNI | 1.02366 | 0.762 |
Time course 36hI-36hNI | 1.12589 | 0.056 |
Time course 60hI-60hNI | 1.21522 | 0.096 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.86766 | 0.391 |
transgenic ySAMdc/azygous control (breaker) | 1.01657 | 1 |
transgenic ySAMdc/azygous control (red) | 0.94293 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03299 | 0.587 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99052 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.84197 | 0.172 |
Manapal/WT (break) | 1.14249 | 0.381 |
Manapal/WT (red) | 0.79896 | 0.242 |
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