Expression of 1-1-5.1.2.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06317 | 0.851 |
27DAP/17DAP | 1.08499 | 0.92 |
39DAP/27DAP | 1.51512 | 0.182 |
41DAP/39DAP | 0.55212 | 0.041 |
42DAP/41DAP | 0.8141 | 0.774 |
43DAP/42DAP | 0.88544 | 0.788 |
47DAP/43DAP | 0.82133 | 0.439 |
52DAP/47DAP | 1.29375 | 0.667 |
57DAP/52DAP | 1.13133 | 0.972 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11485 | 0.5 |
17DAP/reference | 1.02112 | 0.813 |
27DAP/reference | 1.16277 | 0.291 |
39DAP/reference | 1.2283 | 0.032 |
41DAP/reference | 1.05178 | 0.714 |
42DAP/reference | 1.13055 | 0.001 |
43DAP/reference | 1.12663 | 0.189 |
47DAP/reference | 1.32394 | 0.001 |
52DAP/reference | 1.12165 | 0.088 |
57DAP/reference | 1.36338 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28181 | 0.049 |
27DAP/17DAP | 1.04398 | 0.9 |
39DAP/27DAP | 0.74888 | 0.032 |
41DAP/39DAP | 1.29376 | 0.853 |
42DAP/41DAP | 0.98142 | 0.77 |
43DAP/42DAP | 0.72462 | 0.022 |
47DAP/43DAP | 1.01232 | 0.941 |
52DAP/47DAP | 1.0125 | 0.973 |
57DAP/52DAP | 0.78391 | 0.052 |
57DAP/7DAP | 0.70988 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.61996 | 0.028 |
17DAP/reference | 1.60871 | 0.006 |
27DAP/reference | 1.67438 | 0.007 |
39DAP/reference | 1.74004 | 0.005 |
41DAP/reference | 1.77975 | 0.009 |
42DAP/reference | 1.79794 | 0.007 |
43DAP/reference | 1.88672 | 0.006 |
47DAP/reference | 1.86891 | 0.016 |
52DAP/reference | 2.00282 | 0.007 |
57DAP/reference | 1.80303 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06955 | 0.933 |
17DAP/reference | 1.27507 | 0.191 |
27DAP/reference | 1.42253 | 0.02 |
39DAP/reference | 1.34399 | 0.015 |
41DAP/reference | 1.33163 | 0.015 |
42DAP/reference | 1.59241 | 0.011 |
43DAP/reference | 1.06954 | 0.91 |
47DAP/reference | 1.59764 | 0.008 |
52DAP/reference | 1.0139 | 1 |
57DAP/reference | 0.89053 | 0.226 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50274 | 0.019 |
17DAP/reference | 1.18278 | 0.376 |
27DAP/reference | 1.49944 | 0.015 |
39DAP/reference | 1.80414 | 0.006 |
41DAP/reference | 1.44744 | 0.007 |
42DAP/reference | 1.44703 | 0.01 |
43DAP/reference | 1.44534 | 0.022 |
47DAP/reference | 1.19931 | 0.339 |
52DAP/reference | 1.40343 | 0.062 |
57DAP/reference | 1.96594 | 0.008 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0233 | 1 |
26DAP/20DAP | 1.37736 | 0.404 |
34DAP/26DAP | 0.93126 | 0.857 |
51DAP/34DAP | 1.31395 | 0.118 |
52DAP/51DAP | 0.61651 | 0.079 |
53DAP/52DAP | 1.25144 | 0.144 |
55DAP/53DAP | 0.69308 | 0.033 |
57DAP/55DAP | 1.42966 | 0.242 |
62DAP/57DAP | 1.55112 | |
68DAP/62DAP | 0.75722 | 0.505 |
68DAP/14DAP | 0.89774 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04775 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.25588 | 0.068 |
Mature Green Tomato/Ripe Tomato | 3.25324 | 0.016 |
Immature Eggplant/Mature Eggplant | 1.27949 | 0.055 |
Ripe Pepper/Ripe Tomato | 1.07708 | 1 |
Mature Eggplant/Ripe Tomato | 1.56008 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05385 | 1 |
1-1-2/M82 | 1.22437 | 1 |
12-2/M82 | 1.06922 | 0.61 |
12-4/M82 | 1.16994 | 1 |
1-3/M82 | 1.72492 | 0.277 |
2-1-1/M82 | 1.16231 | 0.457 |
2-1/M82 | 0.81583 | 0.74 |
2-6/M82 | 1.0897 | 0.695 |
3-2/M82 | 1.07893 | 0.463 |
4-1-1/M82 | 1.14751 | 1 |
4-1/M82 | 1.04046 | |
4-3-2/M82 | 1.5729 | 0.241 |
4-3/M82 | 1.08206 | 1 |
5-3/M82 | 1.02039 | 1 |
6-2/M82 | 1.3707 | 1 |
6-3/M82 | 0.92531 | 1 |
7-1/M82 | 1.15457 | 0.741 |
7-2/M82 | 1.19186 | 1 |
9-3-2/M82 | 1.22295 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.66797 | |
IL2-6/WTpooled | 1.09722 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.21655 | 1 |
IL12-4/WTpooled | 1.17244 | 0.624 |
IL1-4/WTpooled | 0.7138 | 0.699 |
WT/WTpooled | 0.98905 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05853 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.15656 | 0.894 |
DC3000/delta hrp 6h | 1.04168 | 1 |
DC3000/delta hrp 12h | 1.16597 | 1 |
DC3000/delta hrp 24h | 0.9375 | 0.494 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0893 | 0.087 |
DC3000 delta B/DC3000 delta AB | 1.19562 | 0.198 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07642 | 1 |
Exp 36h | 1.07453 | 1 |
Exp 60h | 1.06313 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98476 | 1 |
Var 0h | 0.54832 | 1 |
Var 12h I row2-row1 | 0.91761 | 0.705 |
Var 12h NI row2-row1 | 1.02159 | 1 |
Var 36h I row2-row1 | 1.13022 | 0.339 |
Var 36h NI row2-row1 | 1.09391 | 1 |
Var 60h I row2-row1 | 0.75247 | 0.582 |
Var 60h NI row2-row1 | 0.99729 | 1 |
Time course 0hI-0hNI | 0.95823 | 0.807 |
Time course 12hI-12hNI | 0.97573 | 0.836 |
Time course 36hI-36hNI | 1.01499 | 0.651 |
Time course 60hI-60hNI | 1.00712 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05662 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 1.05432 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.99288 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.31775 | 0.059 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.05102 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.05878 | 1 |
Manapal/WT (break) | 0.92043 | 1 |
Manapal/WT (red) | 0.86449 | 0.274 |
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