Expression of 1-1-5.1.2.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.063170.851
27DAP/17DAP1.084990.92
39DAP/27DAP1.515120.182
41DAP/39DAP0.552120.041
42DAP/41DAP0.81410.774
43DAP/42DAP0.885440.788
47DAP/43DAP0.821330.439
52DAP/47DAP1.293750.667
57DAP/52DAP1.131330.972

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.114850.5
17DAP/reference1.021120.813
27DAP/reference1.162770.291
39DAP/reference1.22830.032
41DAP/reference1.051780.714
42DAP/reference1.130550.001
43DAP/reference1.126630.189
47DAP/reference1.323940.001
52DAP/reference1.121650.088
57DAP/reference1.363380.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.281810.049
27DAP/17DAP1.043980.9
39DAP/27DAP0.748880.032
41DAP/39DAP1.293760.853
42DAP/41DAP0.981420.77
43DAP/42DAP0.724620.022
47DAP/43DAP1.012320.941
52DAP/47DAP1.01250.973
57DAP/52DAP0.783910.052
57DAP/7DAP0.709881

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.619960.028
17DAP/reference1.608710.006
27DAP/reference1.674380.007
39DAP/reference1.740040.005
41DAP/reference1.779750.009
42DAP/reference1.797940.007
43DAP/reference1.886720.006
47DAP/reference1.868910.016
52DAP/reference2.002820.007
57DAP/reference1.803030.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069550.933
17DAP/reference1.275070.191
27DAP/reference1.422530.02
39DAP/reference1.343990.015
41DAP/reference1.331630.015
42DAP/reference1.592410.011
43DAP/reference1.069540.91
47DAP/reference1.597640.008
52DAP/reference1.01391
57DAP/reference0.890530.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.502740.019
17DAP/reference1.182780.376
27DAP/reference1.499440.015
39DAP/reference1.804140.006
41DAP/reference1.447440.007
42DAP/reference1.447030.01
43DAP/reference1.445340.022
47DAP/reference1.199310.339
52DAP/reference1.403430.062
57DAP/reference1.965940.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.02331
26DAP/20DAP1.377360.404
34DAP/26DAP0.931260.857
51DAP/34DAP1.313950.118
52DAP/51DAP0.616510.079
53DAP/52DAP1.251440.144
55DAP/53DAP0.693080.033
57DAP/55DAP1.429660.242
62DAP/57DAP1.55112
68DAP/62DAP0.757220.505
68DAP/14DAP0.897740.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.047750.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.255880.068
Mature Green Tomato/Ripe Tomato3.253240.016
Immature Eggplant/Mature Eggplant1.279490.055
Ripe Pepper/Ripe Tomato1.077081
Mature Eggplant/Ripe Tomato1.560080.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.053851
1-1-2/M821.224371
12-2/M821.069220.61
12-4/M821.169941
1-3/M821.724920.277
2-1-1/M821.162310.457
2-1/M820.815830.74
2-6/M821.08970.695
3-2/M821.078930.463
4-1-1/M821.147511
4-1/M821.04046
4-3-2/M821.57290.241
4-3/M821.082061
5-3/M821.020391
6-2/M821.37071
6-3/M820.925311
7-1/M821.154570.741
7-2/M821.191861
9-3-2/M821.222951

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.66797
IL2-6/WTpooled1.097220.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.216551
IL12-4/WTpooled1.172440.624
IL1-4/WTpooled0.71380.699
WT/WTpooled0.989051

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.058531

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.156560.894
DC3000/delta hrp 6h1.041681
DC3000/delta hrp 12h1.165971
DC3000/delta hrp 24h0.93750.494

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.08930.087
DC3000 delta B/DC3000 delta AB1.195620.198

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.076421
Exp 36h1.074531
Exp 60h1.063131

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.984761
Var 0h0.548321
Var 12h I row2-row10.917610.705
Var 12h NI row2-row11.021591
Var 36h I row2-row11.130220.339
Var 36h NI row2-row11.093911
Var 60h I row2-row10.752470.582
Var 60h NI row2-row10.997291
Time course 0hI-0hNI0.958230.807
Time course 12hI-12hNI0.975730.836
Time course 36hI-36hNI1.014990.651
Time course 60hI-60hNI1.007121

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.056620.699
transgenic ySAMdc/azygous control (breaker)1.054320.248
transgenic ySAMdc/azygous control (red)0.992881

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.317750.059

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.051020.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.058781
Manapal/WT (break)0.920431
Manapal/WT (red)0.864490.274