Expression of 1-1-5.1.2.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.272440.477
27DAP/17DAP0.810820.46
39DAP/27DAP1.412380.188
41DAP/39DAP1.219980.938
42DAP/41DAP0.902831
43DAP/42DAP0.735950.686
47DAP/43DAP1.116550.727
52DAP/47DAP1.081040.918
57DAP/52DAP0.988150.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.213990.46
17DAP/reference0.815250.013
27DAP/reference0.92180.295
39DAP/reference0.878170.124
41DAP/reference0.745590.013
42DAP/reference0.855410.004
43DAP/reference0.829380.025
47DAP/reference0.894960.018
52DAP/reference1.145060.476
57DAP/reference1.198210.066

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.001170.847
27DAP/17DAP0.881640.724
39DAP/27DAP0.908830.462
41DAP/39DAP0.981730.997
42DAP/41DAP1.117460.601
43DAP/42DAP0.832460.224
47DAP/43DAP0.786580.082
52DAP/47DAP0.768070.439
57DAP/52DAP1.072530.877
57DAP/7DAP0.956921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.897220.08
17DAP/reference1.155470.134
27DAP/reference1.299030.041
39DAP/reference1.420380.036
41DAP/reference1.254750.066
42DAP/reference1.225590.132
43DAP/reference1.180210.083
47DAP/reference1.105740.659
52DAP/reference1.340550.071
57DAP/reference1.245740.082

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.959920.457
17DAP/reference1.007650.873
27DAP/reference1.029990.902
39DAP/reference1.053970.764
41DAP/reference1.091230.372
42DAP/reference1.061590.543
43DAP/reference0.947940.423
47DAP/reference0.909980.11
52DAP/reference1.062690.702
57DAP/reference0.882840.046

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.019381
17DAP/reference1.071640.728
27DAP/reference1.496260.042
39DAP/reference1.471750.019
41DAP/reference1.370090.009
42DAP/reference1.03760.6
43DAP/reference1.159440.076
47DAP/reference0.907040.174
52DAP/reference0.949640.582
57DAP/reference1.197250.028

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.193370.966
26DAP/20DAP0.792160.512
34DAP/26DAP0.91610.816
51DAP/34DAP1.391340.854
52DAP/51DAP0.955481
53DAP/52DAP1.176230.753
55DAP/53DAP1.140390.656
57DAP/55DAP1.106480.986
62DAP/57DAP0.97284
68DAP/62DAP1.427490.29
68DAP/14DAP3.87681

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.540710.264

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.13841
Mature Green Tomato/Ripe Tomato2.613910.015
Immature Eggplant/Mature Eggplant1.061850.462
Ripe Pepper/Ripe Tomato1.125111
Mature Eggplant/Ripe Tomato1.226191

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.68184
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.181331
1-3/M820.99229
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.92409
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.040931
5-3/M821.161271
6-2/M82N/AN/A
6-3/M821.12023
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.31192
IL2-6/WTpooled1.031331
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.974151
IL12-4/WTpooled0.918281
IL1-4/WTpooled1.02659
WT/WTpooled0.914481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.901590.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.036311
DC3000/delta hrp 6h0.983950.95
DC3000/delta hrp 12h1.101841
DC3000/delta hrp 24h0.993971

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.68210.024
DC3000 delta B/DC3000 delta AB0.588170.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.093711
Exp 36h0.949670.943
Exp 60h0.623920.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.968071
Var 0h0.867450.332
Var 12h I row2-row10.765380.565
Var 12h NI row2-row11.013091
Var 36h I row2-row10.95702
Var 36h NI row2-row11.25150.482
Var 60h I row2-row10.868940.582
Var 60h NI row2-row11.036081
Time course 0hI-0hNI0.998281
Time course 12hI-12hNI0.952110.668
Time course 36hI-36hNI0.810740.025
Time course 60hI-60hNI0.351120.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.974710.485
transgenic ySAMdc/azygous control (breaker)1.403880.162
transgenic ySAMdc/azygous control (red)1.115290.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.025590.247

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.820480.227

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.12660.14
Manapal/WT (break)1.058251
Manapal/WT (red)1.008781