Expression of 1-1-5.1.2.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11061 | 0.77 |
27DAP/17DAP | 1.20505 | 0.883 |
39DAP/27DAP | 0.94614 | 0.663 |
41DAP/39DAP | 1.34696 | 0.612 |
42DAP/41DAP | 0.80286 | 0.774 |
43DAP/42DAP | 1.05202 | 1 |
47DAP/43DAP | 1.37377 | 0.569 |
52DAP/47DAP | 1.21689 | 0.639 |
57DAP/52DAP | 0.93822 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10587 | 0.303 |
17DAP/reference | 1.01808 | 0.907 |
27DAP/reference | 1.06424 | 0.696 |
39DAP/reference | 1.04113 | 0.722 |
41DAP/reference | 1.05249 | 0.587 |
42DAP/reference | 0.99233 | 0.484 |
43DAP/reference | 0.94615 | 0.316 |
47DAP/reference | 0.95581 | 0.258 |
52DAP/reference | 0.8539 | 0.086 |
57DAP/reference | 0.98116 | 0.553 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78737 | 0.131 |
27DAP/17DAP | 0.84775 | 0.339 |
39DAP/27DAP | 1.16114 | 0.236 |
41DAP/39DAP | 0.97817 | 0.98 |
42DAP/41DAP | 1.19412 | 0.273 |
43DAP/42DAP | 1.2161 | 0.25 |
47DAP/43DAP | 1.08685 | 0.749 |
52DAP/47DAP | 0.67794 | 0.062 |
57DAP/52DAP | 1.00977 | 1 |
57DAP/7DAP | 1.14118 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04097 | 0.718 |
17DAP/reference | 1.19194 | 0.162 |
27DAP/reference | 1.04695 | 0.551 |
39DAP/reference | 1.06014 | 0.511 |
41DAP/reference | 1.20535 | 0.064 |
42DAP/reference | 0.88929 | 0.211 |
43DAP/reference | 1.03351 | 0.603 |
47DAP/reference | 1.12562 | 0.421 |
52DAP/reference | 1.09961 | 0.092 |
57DAP/reference | 1.19427 | 0.094 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16258 | 0.193 |
17DAP/reference | 0.98627 | 0.659 |
27DAP/reference | 1.13788 | 0.31 |
39DAP/reference | 1.02738 | 1 |
41DAP/reference | 1.0536 | 0.846 |
42DAP/reference | 1.16917 | 0.433 |
43DAP/reference | 1.33555 | 0.157 |
47DAP/reference | 1.08566 | 0.274 |
52DAP/reference | 1.04696 | 1 |
57DAP/reference | 1.09048 | 0.236 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0748 | 0.616 |
17DAP/reference | 1.0805 | 0.638 |
27DAP/reference | 1.10228 | 0.198 |
39DAP/reference | 0.99588 | 0.693 |
41DAP/reference | 1.01106 | 1 |
42DAP/reference | 1.08675 | 0.382 |
43DAP/reference | 1.42407 | 0.084 |
47DAP/reference | 0.99359 | 0.646 |
52DAP/reference | 1.01114 | 1 |
57DAP/reference | 1.08028 | 0.311 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.24726 | 0.966 |
26DAP/20DAP | 1.05363 | 0.886 |
34DAP/26DAP | 1.05164 | 1 |
51DAP/34DAP | 1.01391 | 0.77 |
52DAP/51DAP | 0.68454 | 0.151 |
53DAP/52DAP | 0.74583 | 0.167 |
55DAP/53DAP | 0.997 | 0.807 |
57DAP/55DAP | 1.08042 | 0.898 |
62DAP/57DAP | 1.20763 | |
68DAP/62DAP | 1.02719 | |
68DAP/14DAP | 0.76281 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9472 | 0.52 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 11.2009 | 0.058 |
Mature Green Tomato/Ripe Tomato | 2.08717 | 0.032 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.8476 | |
Mature Eggplant/Ripe Tomato | 0.96265 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98052 | 1 |
1-1-2/M82 | 0.99083 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.30149 | 0.563 |
1-3/M82 | 0.76219 | 0.378 |
2-1-1/M82 | 1.26075 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.8453 | 0.501 |
3-2/M82 | 0.90955 | |
4-1-1/M82 | 0.88731 | 1 |
4-1/M82 | 1.62853 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.92607 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.18509 | |
7-1/M82 | 1.09554 | |
7-2/M82 | 0.76988 | 0.578 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83317 | 1 |
IL2-6/WTpooled | 1.04188 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.94219 | 0.418 |
IL12-4/WTpooled | 1.0843 | 0.673 |
IL1-4/WTpooled | 0.93671 | 0.562 |
WT/WTpooled | 1.03563 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17894 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02994 | 1 |
DC3000/delta hrp 6h | 1.09971 | 0.857 |
DC3000/delta hrp 12h | 1.09832 | 1 |
DC3000/delta hrp 24h | 1.02479 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.86115 | 0.456 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99012 | 1 |
Exp 36h | 0.93571 | 0.943 |
Exp 60h | 0.82665 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96481 | 1 |
Var 0h | 0.84111 | 1 |
Var 12h I row2-row1 | 1.0427 | 0.506 |
Var 12h NI row2-row1 | 0.87784 | 0.546 |
Var 36h I row2-row1 | 0.87203 | 1 |
Var 36h NI row2-row1 | 1.19386 | |
Var 60h I row2-row1 | 0.59195 | 0.374 |
Var 60h NI row2-row1 | 1.45993 | 0.904 |
Time course 0hI-0hNI | 1.03374 | 0.852 |
Time course 12hI-12hNI | 0.93301 | 0.495 |
Time course 36hI-36hNI | 1.03465 | 0.881 |
Time course 60hI-60hNI | 1.36464 | 0.06 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89011 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 0.89362 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.99762 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02369 | 0.234 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.23009 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.87021 | 1 |
Manapal/WT (break) | 0.90516 | 1 |
Manapal/WT (red) | 1.06281 | 1 |
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