Expression of 1-1-5.1.2.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.110610.77
27DAP/17DAP1.205050.883
39DAP/27DAP0.946140.663
41DAP/39DAP1.346960.612
42DAP/41DAP0.802860.774
43DAP/42DAP1.052021
47DAP/43DAP1.373770.569
52DAP/47DAP1.216890.639
57DAP/52DAP0.938220.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.105870.303
17DAP/reference1.018080.907
27DAP/reference1.064240.696
39DAP/reference1.041130.722
41DAP/reference1.052490.587
42DAP/reference0.992330.484
43DAP/reference0.946150.316
47DAP/reference0.955810.258
52DAP/reference0.85390.086
57DAP/reference0.981160.553

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.787370.131
27DAP/17DAP0.847750.339
39DAP/27DAP1.161140.236
41DAP/39DAP0.978170.98
42DAP/41DAP1.194120.273
43DAP/42DAP1.21610.25
47DAP/43DAP1.086850.749
52DAP/47DAP0.677940.062
57DAP/52DAP1.009771
57DAP/7DAP1.141181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.040970.718
17DAP/reference1.191940.162
27DAP/reference1.046950.551
39DAP/reference1.060140.511
41DAP/reference1.205350.064
42DAP/reference0.889290.211
43DAP/reference1.033510.603
47DAP/reference1.125620.421
52DAP/reference1.099610.092
57DAP/reference1.194270.094

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.162580.193
17DAP/reference0.986270.659
27DAP/reference1.137880.31
39DAP/reference1.027381
41DAP/reference1.05360.846
42DAP/reference1.169170.433
43DAP/reference1.335550.157
47DAP/reference1.085660.274
52DAP/reference1.046961
57DAP/reference1.090480.236

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.07480.616
17DAP/reference1.08050.638
27DAP/reference1.102280.198
39DAP/reference0.995880.693
41DAP/reference1.011061
42DAP/reference1.086750.382
43DAP/reference1.424070.084
47DAP/reference0.993590.646
52DAP/reference1.011141
57DAP/reference1.080280.311

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.247260.966
26DAP/20DAP1.053630.886
34DAP/26DAP1.051641
51DAP/34DAP1.013910.77
52DAP/51DAP0.684540.151
53DAP/52DAP0.745830.167
55DAP/53DAP0.9970.807
57DAP/55DAP1.080420.898
62DAP/57DAP1.20763
68DAP/62DAP1.02719
68DAP/14DAP0.76281

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.94720.52

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper11.20090.058
Mature Green Tomato/Ripe Tomato2.087170.032
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.8476
Mature Eggplant/Ripe Tomato0.962651

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.980521
1-1-2/M820.990831
12-2/M82N/AN/A
12-4/M821.301490.563
1-3/M820.762190.378
2-1-1/M821.26075
2-1/M82N/AN/A
2-6/M820.84530.501
3-2/M820.90955
4-1-1/M820.887311
4-1/M821.62853
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.926071
6-2/M82N/AN/A
6-3/M821.18509
7-1/M821.09554
7-2/M820.769880.578
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.833171
IL2-6/WTpooled1.041881
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.942190.418
IL12-4/WTpooled1.08430.673
IL1-4/WTpooled0.936710.562
WT/WTpooled1.035631

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.178941

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.029941
DC3000/delta hrp 6h1.099710.857
DC3000/delta hrp 12h1.098321
DC3000/delta hrp 24h1.024790.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.861150.456

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.990121
Exp 36h0.935710.943
Exp 60h0.826650.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.964811
Var 0h0.841111
Var 12h I row2-row11.04270.506
Var 12h NI row2-row10.877840.546
Var 36h I row2-row10.872031
Var 36h NI row2-row11.19386
Var 60h I row2-row10.591950.374
Var 60h NI row2-row11.459930.904
Time course 0hI-0hNI1.033740.852
Time course 12hI-12hNI0.933010.495
Time course 36hI-36hNI1.034650.881
Time course 60hI-60hNI1.364640.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.890110.314
transgenic ySAMdc/azygous control (breaker)0.893620.251
transgenic ySAMdc/azygous control (red)0.997621

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.023690.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.230090.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.870211
Manapal/WT (break)0.905161
Manapal/WT (red)1.062811