Expression of 1-1-5.1.2.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.618260.403
27DAP/17DAP0.721340.216
39DAP/27DAP1.063520.749
41DAP/39DAP1.02780.978
42DAP/41DAP0.789010.397
43DAP/42DAP0.878220.863
47DAP/43DAP1.13130.825
52DAP/47DAP0.871430.612
57DAP/52DAP0.78660.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.938580.39
17DAP/reference0.958420.597
27DAP/reference1.262630.052
39DAP/reference1.03260.771
41DAP/reference1.028090.963
42DAP/reference1.028410.931
43DAP/reference0.979650.745
47DAP/reference0.944590.032
52DAP/reference1.044970.134
57DAP/reference1.166220.032

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.66790.036
27DAP/17DAP1.103880.817
39DAP/27DAP0.855510.291
41DAP/39DAP0.623590.027
42DAP/41DAP1.264380.593
43DAP/42DAP2.321490.014
47DAP/43DAP1.07720.221
52DAP/47DAP0.516830.041
57DAP/52DAP0.849750.307
57DAP/7DAP0.785191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.0061
17DAP/reference1.240020.045
27DAP/reference1.208570.018
39DAP/reference1.230880.12
41DAP/reference1.117960.153
42DAP/reference0.991210.612
43DAP/reference1.163180.14
47DAP/reference1.21950.21
52DAP/reference0.983990.571
57DAP/reference0.985950.61

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.049040.75
17DAP/reference0.900420.113
27DAP/reference1.006140.735
39DAP/reference1.084440.316
41DAP/reference0.966730.432
42DAP/reference1.082030.17
43DAP/reference0.984680.657
47DAP/reference1.090610.639
52DAP/reference1.109220.444
57DAP/reference0.920670.259

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.989130.653
17DAP/reference1.14730.283
27DAP/reference1.094690.408
39DAP/reference1.213810.037
41DAP/reference1.049940.754
42DAP/reference1.12260.134
43DAP/reference1.210170.194
47DAP/reference0.974410.525
52DAP/reference0.894050.204
57DAP/reference1.105390.347

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.326520.966
26DAP/20DAP1.098520.818
34DAP/26DAP0.665340.322
51DAP/34DAP0.598070.143
52DAP/51DAP1.108520.542
53DAP/52DAP1.027411
55DAP/53DAP1.084020.904
57DAP/55DAP0.8360.479
62DAP/57DAP1.59585
68DAP/62DAP1.566330.5
68DAP/14DAP0.96109

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.120071

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.567660.058
Mature Green Tomato/Ripe Tomato4.568890.016
Immature Eggplant/Mature Eggplant2.079
Ripe Pepper/Ripe Tomato0.60433
Mature Eggplant/Ripe Tomato0.372750.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.40349
1-1-2/M821.329240.977
12-2/M82N/AN/A
12-4/M820.81890.619
1-3/M820.695760.376
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.056041
3-2/M820.82286
4-1-1/M820.9083
4-1/M821.37627
4-3-2/M821.97345
4-3/M821.54062
5-3/M820.981951
6-2/M821.054741
6-3/M820.94436
7-1/M820.57081
7-2/M820.719120.796
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.54877
IL2-6/WTpooled0.970111
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.73230.31
IL12-4/WTpooled0.960131
IL1-4/WTpooled0.89752
WT/WTpooled1.099370.785

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.992591

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.167980.538
DC3000/delta hrp 6h0.905430.95
DC3000/delta hrp 12h1.049621
DC3000/delta hrp 24h0.803730.037

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.459070.094
DC3000 delta B/DC3000 delta AB1.061270.503

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.900271
Exp 36h0.783530.504
Exp 60h0.758810.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.012071
Var 12h I row2-row11.017461
Var 12h NI row2-row11.272610.649
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row11.528251
Var 60h I row2-row11.092281
Var 60h NI row2-row11.010651
Time course 0hI-0hNI0.905490.327
Time course 12hI-12hNI0.852850.26
Time course 36hI-36hNI0.846190.183
Time course 60hI-60hNI0.358660.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.136060.431
transgenic ySAMdc/azygous control (breaker)2.229650.178
transgenic ySAMdc/azygous control (red)1.093461

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.974950.237

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.165211

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.352670.307
Manapal/WT (break)0.96931
Manapal/WT (red)0.480320.181