Expression of 1-1-5.1.2.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.61826 | 0.403 |
27DAP/17DAP | 0.72134 | 0.216 |
39DAP/27DAP | 1.06352 | 0.749 |
41DAP/39DAP | 1.0278 | 0.978 |
42DAP/41DAP | 0.78901 | 0.397 |
43DAP/42DAP | 0.87822 | 0.863 |
47DAP/43DAP | 1.1313 | 0.825 |
52DAP/47DAP | 0.87143 | 0.612 |
57DAP/52DAP | 0.7866 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93858 | 0.39 |
17DAP/reference | 0.95842 | 0.597 |
27DAP/reference | 1.26263 | 0.052 |
39DAP/reference | 1.0326 | 0.771 |
41DAP/reference | 1.02809 | 0.963 |
42DAP/reference | 1.02841 | 0.931 |
43DAP/reference | 0.97965 | 0.745 |
47DAP/reference | 0.94459 | 0.032 |
52DAP/reference | 1.04497 | 0.134 |
57DAP/reference | 1.16622 | 0.032 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.6679 | 0.036 |
27DAP/17DAP | 1.10388 | 0.817 |
39DAP/27DAP | 0.85551 | 0.291 |
41DAP/39DAP | 0.62359 | 0.027 |
42DAP/41DAP | 1.26438 | 0.593 |
43DAP/42DAP | 2.32149 | 0.014 |
47DAP/43DAP | 1.0772 | 0.221 |
52DAP/47DAP | 0.51683 | 0.041 |
57DAP/52DAP | 0.84975 | 0.307 |
57DAP/7DAP | 0.78519 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.006 | 1 |
17DAP/reference | 1.24002 | 0.045 |
27DAP/reference | 1.20857 | 0.018 |
39DAP/reference | 1.23088 | 0.12 |
41DAP/reference | 1.11796 | 0.153 |
42DAP/reference | 0.99121 | 0.612 |
43DAP/reference | 1.16318 | 0.14 |
47DAP/reference | 1.2195 | 0.21 |
52DAP/reference | 0.98399 | 0.571 |
57DAP/reference | 0.98595 | 0.61 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04904 | 0.75 |
17DAP/reference | 0.90042 | 0.113 |
27DAP/reference | 1.00614 | 0.735 |
39DAP/reference | 1.08444 | 0.316 |
41DAP/reference | 0.96673 | 0.432 |
42DAP/reference | 1.08203 | 0.17 |
43DAP/reference | 0.98468 | 0.657 |
47DAP/reference | 1.09061 | 0.639 |
52DAP/reference | 1.10922 | 0.444 |
57DAP/reference | 0.92067 | 0.259 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98913 | 0.653 |
17DAP/reference | 1.1473 | 0.283 |
27DAP/reference | 1.09469 | 0.408 |
39DAP/reference | 1.21381 | 0.037 |
41DAP/reference | 1.04994 | 0.754 |
42DAP/reference | 1.1226 | 0.134 |
43DAP/reference | 1.21017 | 0.194 |
47DAP/reference | 0.97441 | 0.525 |
52DAP/reference | 0.89405 | 0.204 |
57DAP/reference | 1.10539 | 0.347 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.32652 | 0.966 |
26DAP/20DAP | 1.09852 | 0.818 |
34DAP/26DAP | 0.66534 | 0.322 |
51DAP/34DAP | 0.59807 | 0.143 |
52DAP/51DAP | 1.10852 | 0.542 |
53DAP/52DAP | 1.02741 | 1 |
55DAP/53DAP | 1.08402 | 0.904 |
57DAP/55DAP | 0.836 | 0.479 |
62DAP/57DAP | 1.59585 | |
68DAP/62DAP | 1.56633 | 0.5 |
68DAP/14DAP | 0.96109 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.12007 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.56766 | 0.058 |
Mature Green Tomato/Ripe Tomato | 4.56889 | 0.016 |
Immature Eggplant/Mature Eggplant | 2.079 | |
Ripe Pepper/Ripe Tomato | 0.60433 | |
Mature Eggplant/Ripe Tomato | 0.37275 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.40349 | |
1-1-2/M82 | 1.32924 | 0.977 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.8189 | 0.619 |
1-3/M82 | 0.69576 | 0.376 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.05604 | 1 |
3-2/M82 | 0.82286 | |
4-1-1/M82 | 0.9083 | |
4-1/M82 | 1.37627 | |
4-3-2/M82 | 1.97345 | |
4-3/M82 | 1.54062 | |
5-3/M82 | 0.98195 | 1 |
6-2/M82 | 1.05474 | 1 |
6-3/M82 | 0.94436 | |
7-1/M82 | 0.57081 | |
7-2/M82 | 0.71912 | 0.796 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.54877 | |
IL2-6/WTpooled | 0.97011 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.7323 | 0.31 |
IL12-4/WTpooled | 0.96013 | 1 |
IL1-4/WTpooled | 0.89752 | |
WT/WTpooled | 1.09937 | 0.785 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99259 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.16798 | 0.538 |
DC3000/delta hrp 6h | 0.90543 | 0.95 |
DC3000/delta hrp 12h | 1.04962 | 1 |
DC3000/delta hrp 24h | 0.80373 | 0.037 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.45907 | 0.094 |
DC3000 delta B/DC3000 delta AB | 1.06127 | 0.503 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90027 | 1 |
Exp 36h | 0.78353 | 0.504 |
Exp 60h | 0.75881 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.01207 | 1 |
Var 12h I row2-row1 | 1.01746 | 1 |
Var 12h NI row2-row1 | 1.27261 | 0.649 |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | 1.52825 | 1 |
Var 60h I row2-row1 | 1.09228 | 1 |
Var 60h NI row2-row1 | 1.01065 | 1 |
Time course 0hI-0hNI | 0.90549 | 0.327 |
Time course 12hI-12hNI | 0.85285 | 0.26 |
Time course 36hI-36hNI | 0.84619 | 0.183 |
Time course 60hI-60hNI | 0.35866 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13606 | 0.431 |
transgenic ySAMdc/azygous control (breaker) | 2.22965 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.09346 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97495 | 0.237 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.16521 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.35267 | 0.307 |
Manapal/WT (break) | 0.9693 | 1 |
Manapal/WT (red) | 0.48032 | 0.181 |
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