Expression of 1-1-5.1.20.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97043 | 0.699 |
27DAP/17DAP | 1.42875 | 0.769 |
39DAP/27DAP | 0.74264 | 0.376 |
41DAP/39DAP | 1.62351 | 0.298 |
42DAP/41DAP | 0.90121 | 1 |
43DAP/42DAP | 0.99727 | 0.937 |
47DAP/43DAP | 1.36526 | 0.563 |
52DAP/47DAP | 1.06871 | 0.969 |
57DAP/52DAP | 1.17864 | 0.904 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97429 | 0.562 |
17DAP/reference | 1.22425 | 0.017 |
27DAP/reference | 1.03815 | 0.847 |
39DAP/reference | 1.11146 | 0.557 |
41DAP/reference | 1.07365 | 0.516 |
42DAP/reference | 0.88128 | 0.043 |
43DAP/reference | 0.94715 | 0.576 |
47DAP/reference | 1.01063 | 0.764 |
52DAP/reference | 1.06072 | 0.8 |
57DAP/reference | 1.06049 | 0.643 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.36241 | 0.053 |
27DAP/17DAP | 1.24921 | 0.604 |
39DAP/27DAP | 1.08103 | 0.548 |
41DAP/39DAP | 0.92067 | 0.42 |
42DAP/41DAP | 1.00626 | 0.825 |
43DAP/42DAP | 1.02944 | 1 |
47DAP/43DAP | 1.00205 | 0.971 |
52DAP/47DAP | 1.34018 | 0.31 |
57DAP/52DAP | 1.27775 | 0.211 |
57DAP/7DAP | 0.45266 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84279 | 0.246 |
17DAP/reference | 0.90013 | 0.124 |
27DAP/reference | 1.06321 | 0.371 |
39DAP/reference | 0.87029 | 0.043 |
41DAP/reference | 0.90038 | 0.213 |
42DAP/reference | 0.96577 | 0.32 |
43DAP/reference | 0.8376 | 0.037 |
47DAP/reference | 1.00588 | 1 |
52DAP/reference | 1.09499 | 0.732 |
57DAP/reference | 0.86396 | 0.059 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0104 | 0.993 |
17DAP/reference | 0.8542 | 0.089 |
27DAP/reference | 0.90862 | 0.203 |
39DAP/reference | 0.98508 | 0.569 |
41DAP/reference | 0.89794 | 0.145 |
42DAP/reference | 1.03899 | 1 |
43DAP/reference | 1.26172 | 0.424 |
47DAP/reference | 1.22953 | 0.377 |
52DAP/reference | 0.91453 | 0.239 |
57DAP/reference | 0.93885 | 0.408 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81384 | 0.044 |
17DAP/reference | 0.92354 | 0.417 |
27DAP/reference | 0.87448 | 0.174 |
39DAP/reference | 0.94414 | 0.271 |
41DAP/reference | 0.93439 | 0.459 |
42DAP/reference | 1.02541 | 0.943 |
43DAP/reference | 0.97407 | 0.614 |
47DAP/reference | 0.96723 | 0.494 |
52DAP/reference | 1.24114 | 0.324 |
57DAP/reference | 1.18389 | 0.452 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.62747 | 0.966 |
26DAP/20DAP | 1.08135 | 0.905 |
34DAP/26DAP | 1.13697 | 1 |
51DAP/34DAP | 1.00367 | 0.967 |
52DAP/51DAP | 1.14447 | 0.556 |
53DAP/52DAP | 1.12948 | 0.594 |
55DAP/53DAP | 0.93673 | 0.746 |
57DAP/55DAP | 0.98327 | 0.921 |
62DAP/57DAP | 1.1186 | 0.994 |
68DAP/62DAP | 1.37781 | 0.153 |
68DAP/14DAP | 1.48517 | 0.521 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07455 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.15603 | |
Mature Green Tomato/Ripe Tomato | 0.90768 | 0.611 |
Immature Eggplant/Mature Eggplant | 1.11474 | |
Ripe Pepper/Ripe Tomato | 0.98723 | 1 |
Mature Eggplant/Ripe Tomato | 1.02755 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.52038 | 0.907 |
1-1-2/M82 | 0.91531 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.83451 | 0.619 |
1-3/M82 | 0.74621 | 0.378 |
2-1-1/M82 | 0.81571 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.01064 | 1 |
4-3-2/M82 | 0.73543 | |
4-3/M82 | 1.1544 | |
5-3/M82 | 1.03173 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.01633 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.95241 | |
9-3-2/M82 | 0.82986 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.82934 | 0.243 |
IL2-6/WTpooled | 0.88562 | 1 |
IL7-5/WTpooled | 1.00481 | 1 |
IL7-3/WTpooled | 0.95392 | 1 |
IL12-4/WTpooled | 0.98133 | 1 |
IL1-4/WTpooled | 0.88954 | 0.476 |
WT/WTpooled | 0.97031 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97828 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07386 | 0.921 |
DC3000/delta hrp 6h | 0.96018 | 0.95 |
DC3000/delta hrp 12h | 0.85348 | 1 |
DC3000/delta hrp 24h | 0.83327 | 0.143 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.41451 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87984 | 1 |
Exp 36h | 0.9034 | 0.943 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.07738 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 3.60904 | 0.692 |
Var 12h NI row2-row1 | 1.59765 | 0.281 |
Var 36h I row2-row1 | 1.10627 | 1 |
Var 36h NI row2-row1 | 0.36278 | 1 |
Var 60h I row2-row1 | 0.90013 | 0.285 |
Var 60h NI row2-row1 | 0.52974 | 1 |
Time course 0hI-0hNI | 0.91956 | 0.535 |
Time course 12hI-12hNI | 0.81313 | 0.324 |
Time course 36hI-36hNI | 0.98973 | 0.708 |
Time course 60hI-60hNI | 1.41103 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02127 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 1.05256 | 1 |
transgenic ySAMdc/azygous control (red) | 1.07877 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9811 | 0.323 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.96899 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.61718 | 0.172 |
Manapal/WT (break) | 1.06806 | 1 |
Manapal/WT (red) | 0.83655 | 0.183 |
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