Expression of 1-1-5.1.20.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.970430.699
27DAP/17DAP1.428750.769
39DAP/27DAP0.742640.376
41DAP/39DAP1.623510.298
42DAP/41DAP0.901211
43DAP/42DAP0.997270.937
47DAP/43DAP1.365260.563
52DAP/47DAP1.068710.969
57DAP/52DAP1.178640.904

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.974290.562
17DAP/reference1.224250.017
27DAP/reference1.038150.847
39DAP/reference1.111460.557
41DAP/reference1.073650.516
42DAP/reference0.881280.043
43DAP/reference0.947150.576
47DAP/reference1.010630.764
52DAP/reference1.060720.8
57DAP/reference1.060490.643

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.362410.053
27DAP/17DAP1.249210.604
39DAP/27DAP1.081030.548
41DAP/39DAP0.920670.42
42DAP/41DAP1.006260.825
43DAP/42DAP1.029441
47DAP/43DAP1.002050.971
52DAP/47DAP1.340180.31
57DAP/52DAP1.277750.211
57DAP/7DAP0.45266

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.842790.246
17DAP/reference0.900130.124
27DAP/reference1.063210.371
39DAP/reference0.870290.043
41DAP/reference0.900380.213
42DAP/reference0.965770.32
43DAP/reference0.83760.037
47DAP/reference1.005881
52DAP/reference1.094990.732
57DAP/reference0.863960.059

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01040.993
17DAP/reference0.85420.089
27DAP/reference0.908620.203
39DAP/reference0.985080.569
41DAP/reference0.897940.145
42DAP/reference1.038991
43DAP/reference1.261720.424
47DAP/reference1.229530.377
52DAP/reference0.914530.239
57DAP/reference0.938850.408

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.813840.044
17DAP/reference0.923540.417
27DAP/reference0.874480.174
39DAP/reference0.944140.271
41DAP/reference0.934390.459
42DAP/reference1.025410.943
43DAP/reference0.974070.614
47DAP/reference0.967230.494
52DAP/reference1.241140.324
57DAP/reference1.183890.452

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.627470.966
26DAP/20DAP1.081350.905
34DAP/26DAP1.136971
51DAP/34DAP1.003670.967
52DAP/51DAP1.144470.556
53DAP/52DAP1.129480.594
55DAP/53DAP0.936730.746
57DAP/55DAP0.983270.921
62DAP/57DAP1.11860.994
68DAP/62DAP1.377810.153
68DAP/14DAP1.485170.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.074550.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper4.15603
Mature Green Tomato/Ripe Tomato0.907680.611
Immature Eggplant/Mature Eggplant1.11474
Ripe Pepper/Ripe Tomato0.987231
Mature Eggplant/Ripe Tomato1.027551

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.520380.907
1-1-2/M820.915311
12-2/M82N/AN/A
12-4/M820.834510.619
1-3/M820.746210.378
2-1-1/M820.81571
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.010641
4-3-2/M820.73543
4-3/M821.1544
5-3/M821.031731
6-2/M82N/AN/A
6-3/M821.01633
7-1/M82N/AN/A
7-2/M820.95241
9-3-2/M820.829860.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.829340.243
IL2-6/WTpooled0.885621
IL7-5/WTpooled1.004811
IL7-3/WTpooled0.953921
IL12-4/WTpooled0.981331
IL1-4/WTpooled0.889540.476
WT/WTpooled0.970311

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.978281

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.073860.921
DC3000/delta hrp 6h0.960180.95
DC3000/delta hrp 12h0.853481
DC3000/delta hrp 24h0.833270.143

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.41451

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.879841
Exp 36h0.90340.943
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.077381
Var 0hN/AN/A
Var 12h I row2-row13.609040.692
Var 12h NI row2-row11.597650.281
Var 36h I row2-row11.106271
Var 36h NI row2-row10.362781
Var 60h I row2-row10.900130.285
Var 60h NI row2-row10.529741
Time course 0hI-0hNI0.919560.535
Time course 12hI-12hNI0.813130.324
Time course 36hI-36hNI0.989730.708
Time course 60hI-60hNI1.411030.022

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.021270.798
transgenic ySAMdc/azygous control (breaker)1.052561
transgenic ySAMdc/azygous control (red)1.078771

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.98110.323

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.968990.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.617180.172
Manapal/WT (break)1.068061
Manapal/WT (red)0.836550.183