Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.1.20.9

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.92184	0.617
27DAP/17DAP	1.02905	1
39DAP/27DAP	1.14014	0.74
41DAP/39DAP	1.2473	0.638
42DAP/41DAP	1.12306	0.949
43DAP/42DAP	1.11456	1
47DAP/43DAP	1.0994	0.904
52DAP/47DAP	1.06955	0.973
57DAP/52DAP	0.89624	0.803

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.86287	0.071
17DAP/reference	1.04766	0.172
27DAP/reference	1.02094	0.88
39DAP/reference	0.93711	0.315
41DAP/reference	0.91704	0.201
42DAP/reference	0.99128	0.484
43DAP/reference	1.0061	1
47DAP/reference	0.88033	0.013
52DAP/reference	0.81716	0.121
57DAP/reference	0.82347	0.035

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.90488	0.277
27DAP/17DAP	1.03384	0.957
39DAP/27DAP	1.1244	0.285
41DAP/39DAP	1.0386	1
42DAP/41DAP	1.11989	0.514
43DAP/42DAP	1.06671	0.351
47DAP/43DAP	1.04923	0.822
52DAP/47DAP	1.033	0.9
57DAP/52DAP	0.90634	0.371
57DAP/7DAP	1.0622	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94159	0.27
17DAP/reference	0.84534	0.011
27DAP/reference	0.75274	0.01
39DAP/reference	0.90155	0.011
41DAP/reference	0.89942	0.016
42DAP/reference	0.89992	0.082
43DAP/reference	0.85196	0.014
47DAP/reference	0.94016	0.168
52DAP/reference	0.77308	0.013
57DAP/reference	0.82925	0.01

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.03938	0.605
17DAP/reference	0.94562	0.357
27DAP/reference	0.86642	0.115
39DAP/reference	0.81821	0.077
41DAP/reference	0.78311	0.05
42DAP/reference	0.79308	0.03
43DAP/reference	0.98869	0.692
47DAP/reference	0.87695	0.025
52DAP/reference	0.85183	0.018
57DAP/reference	1.05783	0.771

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.87437	0.104
17DAP/reference	0.95295	0.56
27DAP/reference	0.80724	0.051
39DAP/reference	0.80505	0.018
41DAP/reference	0.7866	0.018
42DAP/reference	0.72214	0.02
43DAP/reference	0.77196	0.033
47DAP/reference	0.9978	0.646
52DAP/reference	0.7993	0.186
57DAP/reference	0.62969	0.02

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.8205	0.541
26DAP/20DAP	1.05764	0.886
34DAP/26DAP	0.89889	0.509
51DAP/34DAP	1.17512	0.232
52DAP/51DAP	1.09106	0.323
53DAP/52DAP	0.90077	0.307
55DAP/53DAP	1.07481	0.589
57DAP/55DAP	1.02291	0.935
62DAP/57DAP	1.04901	0.833
68DAP/62DAP	1.07208	0.831
68DAP/14DAP	0.9767	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.87294	0.175

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.88711	0.39
Mature Green Tomato/Ripe Tomato	0.78913	0.182
Immature Eggplant/Mature Eggplant	1.10157	0.259
Ripe Pepper/Ripe Tomato	1.54152	1
Mature Eggplant/Ripe Tomato	1.2659	0.26

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.86772	0.736
1-1-2/M82	1.05759	1
12-2/M82	1.15234	1
12-4/M82	1.00026	1
1-3/M82	0.97223	1
2-1-1/M82	1.07764	0.689
2-1/M82	0.98024	0.325
2-6/M82	1.04049	1
3-2/M82	0.93174	0.752
4-1-1/M82	1.18171	1
4-1/M82	0.99755	1
4-3-2/M82	1.17208	0.508
4-3/M82	1.09266	1
5-3/M82	0.97745	1
6-2/M82	1.04585	1
6-3/M82	0.9329	1
7-1/M82	1.0276	1
7-2/M82	1.02692	1
9-3-2/M82	1.3071	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.26928	0.277
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	1.56487	0.75
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	N/A	N/A
IL1-4/WTpooled	0.92226
WT/WTpooled	N/A	N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.02892	0.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.97824	1
DC3000/delta hrp 6h	1.17704	1
DC3000/delta hrp 12h	1.14635	1
DC3000/delta hrp 24h	1.07001	0.728

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.90427	0.597
DC3000 delta B/DC3000 delta AB	0.98933	1

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.41115	1
Exp 36h	1.14496	0.693
Exp 60h	1.14928	0.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.01838	0.75
Var 0h	N/A	N/A
Var 12h I row2-row1	1.07	0.506
Var 12h NI row2-row1	1.01049	1
Var 36h I row2-row1	1.19685	0.339
Var 36h NI row2-row1	1.08535	0.482
Var 60h I row2-row1	0.96207	0.952
Var 60h NI row2-row1	1.08048	0.631
Time course 0hI-0hNI	0.92969	0.418
Time course 12hI-12hNI	0.9612	0.54
Time course 36hI-36hNI	0.97269	0.389
Time course 60hI-60hNI	1.11881	0.115

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.16994	0.272
transgenic ySAMdc/azygous control (breaker)	1.0879	1
transgenic ySAMdc/azygous control (red)	1.02836	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.02201	0.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.81862	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.47085	0.093
Manapal/WT (break)	1.2804	0.381
Manapal/WT (red)	1.01844	1