Expression of 1-1-5.1.3.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.075730.893
27DAP/17DAP0.838430.641
39DAP/27DAP0.936840.719
41DAP/39DAP1.001240.873
42DAP/41DAP1.140580.999
43DAP/42DAP1.091351
47DAP/43DAP0.880050.492
52DAP/47DAP1.373620.485
57DAP/52DAP2.082720.972

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.190450.121
17DAP/reference0.763880.016
27DAP/reference0.873070.17
39DAP/reference1.361040.664
41DAP/reference0.810130.065
42DAP/reference1.55570.002
43DAP/reference0.8142
47DAP/reference0.878750.137
52DAP/reference0.92270.292
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.01571
27DAP/17DAP0.799910.259
39DAP/27DAP0.760280.144
41DAP/39DAP1.228910.887
42DAP/41DAP0.77740.248
43DAP/42DAP1.340380.478
47DAP/43DAP1.144720.837
52DAP/47DAP1.451020.192
57DAP/52DAP1.185820.638
57DAP/7DAP2.16981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.056240.65
17DAP/reference1.20430.018
27DAP/reference1.250730.018
39DAP/reference1.414090.023
41DAP/reference1.515530.01
42DAP/reference1.363280.021
43DAP/reference1.238550.066
47DAP/reference1.190420.031
52DAP/reference1.323210.02
57DAP/reference1.396930.037

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.147540.507
17DAP/reference1.340920.008
27DAP/reference1.50160.044
39DAP/reference1.618460.014
41DAP/reference1.879470.006
42DAP/reference1.600090.008
43DAP/reference0.973890.507
47DAP/reference1.06060.332
52DAP/reference1.112410.135
57DAP/reference1.053480.957

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.116920.545
17DAP/reference1.02630.778
27DAP/reference1.059020.644
39DAP/reference1.109150.318
41DAP/reference1.083150.486
42DAP/reference1.449590.043
43DAP/reference1.505550.028
47DAP/reference0.844660.207
52DAP/reference1.67210.04
57DAP/reference1.772340.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.176970.966
26DAP/20DAP1.58894
34DAP/26DAP1.255171
51DAP/34DAP1.465050.706
52DAP/51DAP1.35398
53DAP/52DAP0.991160.983
55DAP/53DAP1.5060.05
57DAP/55DAP0.989470.925
62DAP/57DAP0.50079
68DAP/62DAP1.237520.148
68DAP/14DAP1.330160.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.555480.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.71397
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.912340.448
Ripe Pepper/Ripe Tomato0.043061
Mature Eggplant/Ripe Tomato0.20653

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.018771
IL2-6/WTpooled1.147340.419
IL7-5/WTpooled0.998641
IL7-3/WTpooled0.843170.418
IL12-4/WTpooled0.918080.71
IL1-4/WTpooled1.010571
WT/WTpooled1.039341

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.632650.226

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.901211
DC3000/delta hrp 6h0.966730.95
DC3000/delta hrp 12h0.959891
DC3000/delta hrp 24h1.043341

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.470290.022

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.835661
Exp 36h0.764290.504
Exp 60h0.775720.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.00311
Var 0h1.677330.782
Var 12h I row2-row11.035640.736
Var 12h NI row2-row11.078541
Var 36h I row2-row10.83990.805
Var 36h NI row2-row11.467170.253
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.301440.904
Time course 0hI-0hNI0.845690.166
Time course 12hI-12hNI0.982440.893
Time course 36hI-36hNI0.881880.028
Time course 60hI-60hNI0.187370.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.525440.312
transgenic ySAMdc/azygous control (breaker)0.772980.173
transgenic ySAMdc/azygous control (red)1.19010.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.018190.525

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.150041

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.530380.172
Manapal/WT (break)1.26870.381
Manapal/WT (red)1.127591