Expression of 1-1-5.1.3.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07573 | 0.893 |
27DAP/17DAP | 0.83843 | 0.641 |
39DAP/27DAP | 0.93684 | 0.719 |
41DAP/39DAP | 1.00124 | 0.873 |
42DAP/41DAP | 1.14058 | 0.999 |
43DAP/42DAP | 1.09135 | 1 |
47DAP/43DAP | 0.88005 | 0.492 |
52DAP/47DAP | 1.37362 | 0.485 |
57DAP/52DAP | 2.08272 | 0.972 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19045 | 0.121 |
17DAP/reference | 0.76388 | 0.016 |
27DAP/reference | 0.87307 | 0.17 |
39DAP/reference | 1.36104 | 0.664 |
41DAP/reference | 0.81013 | 0.065 |
42DAP/reference | 1.5557 | 0.002 |
43DAP/reference | 0.8142 | |
47DAP/reference | 0.87875 | 0.137 |
52DAP/reference | 0.9227 | 0.292 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0157 | 1 |
27DAP/17DAP | 0.79991 | 0.259 |
39DAP/27DAP | 0.76028 | 0.144 |
41DAP/39DAP | 1.22891 | 0.887 |
42DAP/41DAP | 0.7774 | 0.248 |
43DAP/42DAP | 1.34038 | 0.478 |
47DAP/43DAP | 1.14472 | 0.837 |
52DAP/47DAP | 1.45102 | 0.192 |
57DAP/52DAP | 1.18582 | 0.638 |
57DAP/7DAP | 2.16981 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05624 | 0.65 |
17DAP/reference | 1.2043 | 0.018 |
27DAP/reference | 1.25073 | 0.018 |
39DAP/reference | 1.41409 | 0.023 |
41DAP/reference | 1.51553 | 0.01 |
42DAP/reference | 1.36328 | 0.021 |
43DAP/reference | 1.23855 | 0.066 |
47DAP/reference | 1.19042 | 0.031 |
52DAP/reference | 1.32321 | 0.02 |
57DAP/reference | 1.39693 | 0.037 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14754 | 0.507 |
17DAP/reference | 1.34092 | 0.008 |
27DAP/reference | 1.5016 | 0.044 |
39DAP/reference | 1.61846 | 0.014 |
41DAP/reference | 1.87947 | 0.006 |
42DAP/reference | 1.60009 | 0.008 |
43DAP/reference | 0.97389 | 0.507 |
47DAP/reference | 1.0606 | 0.332 |
52DAP/reference | 1.11241 | 0.135 |
57DAP/reference | 1.05348 | 0.957 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11692 | 0.545 |
17DAP/reference | 1.0263 | 0.778 |
27DAP/reference | 1.05902 | 0.644 |
39DAP/reference | 1.10915 | 0.318 |
41DAP/reference | 1.08315 | 0.486 |
42DAP/reference | 1.44959 | 0.043 |
43DAP/reference | 1.50555 | 0.028 |
47DAP/reference | 0.84466 | 0.207 |
52DAP/reference | 1.6721 | 0.04 |
57DAP/reference | 1.77234 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.17697 | 0.966 |
26DAP/20DAP | 1.58894 | |
34DAP/26DAP | 1.25517 | 1 |
51DAP/34DAP | 1.46505 | 0.706 |
52DAP/51DAP | 1.35398 | |
53DAP/52DAP | 0.99116 | 0.983 |
55DAP/53DAP | 1.506 | 0.05 |
57DAP/55DAP | 0.98947 | 0.925 |
62DAP/57DAP | 0.50079 | |
68DAP/62DAP | 1.23752 | 0.148 |
68DAP/14DAP | 1.33016 | 0.521 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.55548 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.71397 | |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.91234 | 0.448 |
Ripe Pepper/Ripe Tomato | 0.04306 | 1 |
Mature Eggplant/Ripe Tomato | 0.20653 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01877 | 1 |
IL2-6/WTpooled | 1.14734 | 0.419 |
IL7-5/WTpooled | 0.99864 | 1 |
IL7-3/WTpooled | 0.84317 | 0.418 |
IL12-4/WTpooled | 0.91808 | 0.71 |
IL1-4/WTpooled | 1.01057 | 1 |
WT/WTpooled | 1.03934 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.63265 | 0.226 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.90121 | 1 |
DC3000/delta hrp 6h | 0.96673 | 0.95 |
DC3000/delta hrp 12h | 0.95989 | 1 |
DC3000/delta hrp 24h | 1.04334 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.47029 | 0.022 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.83566 | 1 |
Exp 36h | 0.76429 | 0.504 |
Exp 60h | 0.77572 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0031 | 1 |
Var 0h | 1.67733 | 0.782 |
Var 12h I row2-row1 | 1.03564 | 0.736 |
Var 12h NI row2-row1 | 1.07854 | 1 |
Var 36h I row2-row1 | 0.8399 | 0.805 |
Var 36h NI row2-row1 | 1.46717 | 0.253 |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.30144 | 0.904 |
Time course 0hI-0hNI | 0.84569 | 0.166 |
Time course 12hI-12hNI | 0.98244 | 0.893 |
Time course 36hI-36hNI | 0.88188 | 0.028 |
Time course 60hI-60hNI | 0.18737 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.52544 | 0.312 |
transgenic ySAMdc/azygous control (breaker) | 0.77298 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.1901 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01819 | 0.525 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.15004 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.53038 | 0.172 |
Manapal/WT (break) | 1.2687 | 0.381 |
Manapal/WT (red) | 1.12759 | 1 |
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