Expression of 1-1-5.1.3.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.77728 | 0.249 |
27DAP/17DAP | 1.57626 | 0.677 |
39DAP/27DAP | 0.88194 | 0.512 |
41DAP/39DAP | 1.06218 | 0.701 |
42DAP/41DAP | 0.57636 | 0.262 |
43DAP/42DAP | 0.93982 | 0.877 |
47DAP/43DAP | 0.81551 | 0.576 |
52DAP/47DAP | 2.7766 | 0.092 |
57DAP/52DAP | 1.12888 | 0.826 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10348 | 0.846 |
17DAP/reference | 1.11055 | 0.858 |
27DAP/reference | 0.75121 | 0.147 |
39DAP/reference | 0.8173 | 0.213 |
41DAP/reference | 0.64495 | 0.039 |
42DAP/reference | 1.02291 | 0.665 |
43DAP/reference | 0.68243 | 0.037 |
47DAP/reference | 0.85879 | 0.137 |
52DAP/reference | 1.10827 | 0.025 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09636 | 0.847 |
27DAP/17DAP | 0.87774 | 0.58 |
39DAP/27DAP | 1.01507 | 0.932 |
41DAP/39DAP | 1.48722 | 0.284 |
42DAP/41DAP | 0.8179 | 0.174 |
43DAP/42DAP | 1.38326 | 0.134 |
47DAP/43DAP | 1.1853 | 0.508 |
52DAP/47DAP | 2.23973 | 0.044 |
57DAP/52DAP | 1.55517 | 0.105 |
57DAP/7DAP | 1.2292 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90413 | 0.104 |
17DAP/reference | 0.9581 | 0.253 |
27DAP/reference | 0.94601 | 0.303 |
39DAP/reference | 0.87144 | 0.027 |
41DAP/reference | 0.86908 | 0.036 |
42DAP/reference | 0.84749 | 0.106 |
43DAP/reference | 0.82169 | 0.04 |
47DAP/reference | 1.00258 | 1 |
52DAP/reference | 0.74517 | 0.011 |
57DAP/reference | 0.8394 | 0.069 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0186 | 1 |
17DAP/reference | 1.03071 | 0.92 |
27DAP/reference | 1.20881 | 0.111 |
39DAP/reference | 1.25107 | 0.047 |
41DAP/reference | 1.1785 | 0.277 |
42DAP/reference | 1.02254 | 1 |
43DAP/reference | 0.87499 | 0.191 |
47DAP/reference | 1.01699 | 0.59 |
52DAP/reference | 1.14815 | 0.021 |
57DAP/reference | 1.13341 | 0.449 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17153 | 0.167 |
17DAP/reference | 0.95638 | 0.579 |
27DAP/reference | 1.00192 | 0.805 |
39DAP/reference | 0.99847 | 0.889 |
41DAP/reference | 0.9132 | 0.237 |
42DAP/reference | 0.95878 | 0.552 |
43DAP/reference | 0.91381 | 0.216 |
47DAP/reference | 0.99146 | 0.646 |
52DAP/reference | 1.26446 | 0.583 |
57DAP/reference | 1.26435 | 0.062 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00035 | 1 |
26DAP/20DAP | 0.81808 | 0.512 |
34DAP/26DAP | 1.14704 | 1 |
51DAP/34DAP | 1.16391 | 0.496 |
52DAP/51DAP | 1.98033 | 0.103 |
53DAP/52DAP | 0.39648 | 0.049 |
55DAP/53DAP | 0.68663 | 0.085 |
57DAP/55DAP | 0.85465 | 0.596 |
62DAP/57DAP | 4.74318 | |
68DAP/62DAP | 0.56769 | 0.641 |
68DAP/14DAP | 1.30371 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.40841 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.48576 | 0.164 |
Mature Green Tomato/Ripe Tomato | 0.31327 | 0.019 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.74685 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.29591 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.31227 | |
1-1-2/M82 | 0.99341 | |
12-2/M82 | 2.48767 | |
12-4/M82 | 0.9938 | 1 |
1-3/M82 | 1.44421 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 2.55258 | |
5-3/M82 | 0.52831 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05019 | 1 |
IL2-6/WTpooled | 1.14458 | 0.419 |
IL7-5/WTpooled | 0.61535 | 1 |
IL7-3/WTpooled | 1.02773 | 1 |
IL12-4/WTpooled | 1.01957 | 1 |
IL1-4/WTpooled | 1.18783 | 1 |
WT/WTpooled | 1.02606 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06057 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00948 | 0.921 |
DC3000/delta hrp 6h | 0.94843 | 0.95 |
DC3000/delta hrp 12h | 0.78327 | |
DC3000/delta hrp 24h | 1.06281 | 0.438 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04432 | 1 |
Exp 36h | 1.23858 | 1 |
Exp 60h | 1.09164 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02055 | 1 |
Var 0h | 1.04916 | 1 |
Var 12h I row2-row1 | 1.03492 | 1 |
Var 12h NI row2-row1 | 0.68793 | 0.627 |
Var 36h I row2-row1 | 1.10335 | 0.908 |
Var 36h NI row2-row1 | 9.16701 | 1 |
Var 60h I row2-row1 | 0.78317 | 0.832 |
Var 60h NI row2-row1 | 0.70895 | 0.977 |
Time course 0hI-0hNI | 0.88484 | 0.437 |
Time course 12hI-12hNI | 1.77827 | 0.012 |
Time course 36hI-36hNI | 2.46458 | 0.004 |
Time course 60hI-60hNI | 1.53825 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94765 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 0.80216 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.11927 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9704 | 0.126 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.58842 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.76424 | 0.172 |
Manapal/WT (break) | 0.76895 | 1 |
Manapal/WT (red) | 0.68516 | 0.181 |
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