Expression of 1-1-5.1.3.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.777280.249
27DAP/17DAP1.576260.677
39DAP/27DAP0.881940.512
41DAP/39DAP1.062180.701
42DAP/41DAP0.576360.262
43DAP/42DAP0.939820.877
47DAP/43DAP0.815510.576
52DAP/47DAP2.77660.092
57DAP/52DAP1.128880.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.103480.846
17DAP/reference1.110550.858
27DAP/reference0.751210.147
39DAP/reference0.81730.213
41DAP/reference0.644950.039
42DAP/reference1.022910.665
43DAP/reference0.682430.037
47DAP/reference0.858790.137
52DAP/reference1.108270.025
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.096360.847
27DAP/17DAP0.877740.58
39DAP/27DAP1.015070.932
41DAP/39DAP1.487220.284
42DAP/41DAP0.81790.174
43DAP/42DAP1.383260.134
47DAP/43DAP1.18530.508
52DAP/47DAP2.239730.044
57DAP/52DAP1.555170.105
57DAP/7DAP1.22921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.904130.104
17DAP/reference0.95810.253
27DAP/reference0.946010.303
39DAP/reference0.871440.027
41DAP/reference0.869080.036
42DAP/reference0.847490.106
43DAP/reference0.821690.04
47DAP/reference1.002581
52DAP/reference0.745170.011
57DAP/reference0.83940.069

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01861
17DAP/reference1.030710.92
27DAP/reference1.208810.111
39DAP/reference1.251070.047
41DAP/reference1.17850.277
42DAP/reference1.022541
43DAP/reference0.874990.191
47DAP/reference1.016990.59
52DAP/reference1.148150.021
57DAP/reference1.133410.449

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.171530.167
17DAP/reference0.956380.579
27DAP/reference1.001920.805
39DAP/reference0.998470.889
41DAP/reference0.91320.237
42DAP/reference0.958780.552
43DAP/reference0.913810.216
47DAP/reference0.991460.646
52DAP/reference1.264460.583
57DAP/reference1.264350.062

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.000351
26DAP/20DAP0.818080.512
34DAP/26DAP1.147041
51DAP/34DAP1.163910.496
52DAP/51DAP1.980330.103
53DAP/52DAP0.396480.049
55DAP/53DAP0.686630.085
57DAP/55DAP0.854650.596
62DAP/57DAP4.74318
68DAP/62DAP0.567690.641
68DAP/14DAP1.30371

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.408410.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.485760.164
Mature Green Tomato/Ripe Tomato0.313270.019
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.746850.293
Mature Eggplant/Ripe Tomato0.295911

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.31227
1-1-2/M820.99341
12-2/M822.48767
12-4/M820.99381
1-3/M821.44421
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M822.55258
5-3/M820.52831
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.050191
IL2-6/WTpooled1.144580.419
IL7-5/WTpooled0.615351
IL7-3/WTpooled1.027731
IL12-4/WTpooled1.019571
IL1-4/WTpooled1.187831
WT/WTpooled1.026061

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.060571

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.009480.921
DC3000/delta hrp 6h0.948430.95
DC3000/delta hrp 12h0.78327
DC3000/delta hrp 24h1.062810.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.044321
Exp 36h1.238581
Exp 60h1.091641

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020551
Var 0h1.049161
Var 12h I row2-row11.034921
Var 12h NI row2-row10.687930.627
Var 36h I row2-row11.103350.908
Var 36h NI row2-row19.167011
Var 60h I row2-row10.783170.832
Var 60h NI row2-row10.708950.977
Time course 0hI-0hNI0.884840.437
Time course 12hI-12hNI1.778270.012
Time course 36hI-36hNI2.464580.004
Time course 60hI-60hNI1.538250.022

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.947650.348
transgenic ySAMdc/azygous control (breaker)0.802160.49
transgenic ySAMdc/azygous control (red)1.119270.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.97040.126

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.588420.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.764240.172
Manapal/WT (break)0.768951
Manapal/WT (red)0.685160.181