Expression of 1-1-5.1.3.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16406 | 0.863 |
27DAP/17DAP | 1.19706 | 0.783 |
39DAP/27DAP | 0.93898 | 0.682 |
41DAP/39DAP | 1.39233 | 0.264 |
42DAP/41DAP | 1.65318 | 0.151 |
43DAP/42DAP | 1.32201 | 0.46 |
47DAP/43DAP | 0.89691 | 0.64 |
52DAP/47DAP | 0.86504 | 0.627 |
57DAP/52DAP | 1.17722 | 0.955 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.69807 | 0.043 |
17DAP/reference | 0.71537 | 0.008 |
27DAP/reference | 0.94115 | 0.581 |
39DAP/reference | 0.66942 | 0.016 |
41DAP/reference | 0.6358 | 0.026 |
42DAP/reference | 0.78097 | 0.012 |
43DAP/reference | 0.80896 | |
47DAP/reference | 1.02808 | 1 |
52DAP/reference | 0.98787 | 0.598 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06036 | 0.841 |
27DAP/17DAP | 0.97718 | 0.919 |
39DAP/27DAP | 1.22347 | 0.558 |
41DAP/39DAP | 0.75068 | 0.108 |
42DAP/41DAP | 2.07487 | 0.003 |
43DAP/42DAP | 3.48135 | 0.013 |
47DAP/43DAP | 1.33264 | 0.024 |
52DAP/47DAP | 0.92596 | 0.801 |
57DAP/52DAP | 0.52761 | 0.052 |
57DAP/7DAP | 1.17098 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83289 | 0.066 |
17DAP/reference | 0.8501 | 0.082 |
27DAP/reference | 0.92388 | 0.094 |
39DAP/reference | 1.11455 | 0.634 |
41DAP/reference | 0.95334 | 0.357 |
42DAP/reference | 0.91901 | 0.09 |
43DAP/reference | 1.06185 | 0.873 |
47DAP/reference | 1.22743 | 0.047 |
52DAP/reference | 0.88652 | 0.15 |
57DAP/reference | 0.87516 | 0.077 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.68586 | 0.01 |
17DAP/reference | 0.63832 | 0.008 |
27DAP/reference | 0.85119 | 0.093 |
39DAP/reference | 0.96611 | 0.416 |
41DAP/reference | 1.02592 | 0.96 |
42DAP/reference | 0.93882 | 0.169 |
43DAP/reference | 0.8141 | 0.135 |
47DAP/reference | 0.84634 | 0.02 |
52DAP/reference | 1.07457 | 0.444 |
57DAP/reference | 0.64397 | 0.005 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86524 | 0.082 |
17DAP/reference | 0.95233 | 0.537 |
27DAP/reference | 0.80312 | 0.04 |
39DAP/reference | 0.88135 | 0.111 |
41DAP/reference | 1.00905 | 1 |
42DAP/reference | 1.3529 | 0.035 |
43DAP/reference | 1.1389 | 0.254 |
47DAP/reference | 1.00401 | 0.687 |
52DAP/reference | 0.8591 | 0.18 |
57DAP/reference | 1.55184 | 0.044 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92123 | 1 |
26DAP/20DAP | 1.54145 | 0.366 |
34DAP/26DAP | 1.45365 | 0.819 |
51DAP/34DAP | 1.06483 | 0.978 |
52DAP/51DAP | 1.42813 | 0.046 |
53DAP/52DAP | 0.72902 | 0.133 |
55DAP/53DAP | 1.18342 | 0.748 |
57DAP/55DAP | 0.60489 | 0.031 |
62DAP/57DAP | 2.25228 | |
68DAP/62DAP | 3.28457 | 0.02 |
68DAP/14DAP | 3.42404 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.67685 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.45244 | 0.033 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.20235 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.41814 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.62067 | 0.673 |
1-1-2/M82 | 0.97186 | 1 |
12-2/M82 | 0.80966 | 0.862 |
12-4/M82 | 0.91551 | 1 |
1-3/M82 | 0.89806 | 0.501 |
2-1-1/M82 | 0.67179 | 0.465 |
2-1/M82 | 0.7108 | 0.322 |
2-6/M82 | 0.88714 | 1 |
3-2/M82 | 1.57902 | |
4-1-1/M82 | 0.70521 | |
4-1/M82 | 0.71215 | 0.737 |
4-3-2/M82 | 0.70314 | |
4-3/M82 | 0.41514 | 0.388 |
5-3/M82 | 1.15375 | 1 |
6-2/M82 | 1.68524 | 0.219 |
6-3/M82 | 1.02197 | 1 |
7-1/M82 | 0.92409 | 0.476 |
7-2/M82 | 0.49392 | 0.388 |
9-3-2/M82 | 0.90123 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.22569 | 0.277 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.00911 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.26028 | 0.426 |
WT/WTpooled | 1.94866 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09227 | 0.846 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.14999 | 1 |
DC3000/delta hrp 24h | 0.94694 | 0.575 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.79418 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.07295 | 0.782 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | 1.0521 | |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | 0.80812 | |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 0.84754 | 0.691 |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | 1.07484 | |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.67739 | 0.261 |
transgenic ySAMdc/azygous control (breaker) | 1.13828 | 1 |
transgenic ySAMdc/azygous control (red) | 1.0931 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95604 | 0.256 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.1077 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.01683 | 1 |
Manapal/WT (red) | 1.0808 | 1 |
|
|