Expression of 1-1-5.1.3.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.164060.863
27DAP/17DAP1.197060.783
39DAP/27DAP0.938980.682
41DAP/39DAP1.392330.264
42DAP/41DAP1.653180.151
43DAP/42DAP1.322010.46
47DAP/43DAP0.896910.64
52DAP/47DAP0.865040.627
57DAP/52DAP1.177220.955

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.698070.043
17DAP/reference0.715370.008
27DAP/reference0.941150.581
39DAP/reference0.669420.016
41DAP/reference0.63580.026
42DAP/reference0.780970.012
43DAP/reference0.80896
47DAP/reference1.028081
52DAP/reference0.987870.598
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.060360.841
27DAP/17DAP0.977180.919
39DAP/27DAP1.223470.558
41DAP/39DAP0.750680.108
42DAP/41DAP2.074870.003
43DAP/42DAP3.481350.013
47DAP/43DAP1.332640.024
52DAP/47DAP0.925960.801
57DAP/52DAP0.527610.052
57DAP/7DAP1.170981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.832890.066
17DAP/reference0.85010.082
27DAP/reference0.923880.094
39DAP/reference1.114550.634
41DAP/reference0.953340.357
42DAP/reference0.919010.09
43DAP/reference1.061850.873
47DAP/reference1.227430.047
52DAP/reference0.886520.15
57DAP/reference0.875160.077

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.685860.01
17DAP/reference0.638320.008
27DAP/reference0.851190.093
39DAP/reference0.966110.416
41DAP/reference1.025920.96
42DAP/reference0.938820.169
43DAP/reference0.81410.135
47DAP/reference0.846340.02
52DAP/reference1.074570.444
57DAP/reference0.643970.005

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.865240.082
17DAP/reference0.952330.537
27DAP/reference0.803120.04
39DAP/reference0.881350.111
41DAP/reference1.009051
42DAP/reference1.35290.035
43DAP/reference1.13890.254
47DAP/reference1.004010.687
52DAP/reference0.85910.18
57DAP/reference1.551840.044

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.921231
26DAP/20DAP1.541450.366
34DAP/26DAP1.453650.819
51DAP/34DAP1.064830.978
52DAP/51DAP1.428130.046
53DAP/52DAP0.729020.133
55DAP/53DAP1.183420.748
57DAP/55DAP0.604890.031
62DAP/57DAP2.25228
68DAP/62DAP3.284570.02
68DAP/14DAP3.42404

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.676850.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.452440.033
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.202350.293
Mature Eggplant/Ripe Tomato0.418141

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.620670.673
1-1-2/M820.971861
12-2/M820.809660.862
12-4/M820.915511
1-3/M820.898060.501
2-1-1/M820.671790.465
2-1/M820.71080.322
2-6/M820.887141
3-2/M821.57902
4-1-1/M820.70521
4-1/M820.712150.737
4-3-2/M820.70314
4-3/M820.415140.388
5-3/M821.153751
6-2/M821.685240.219
6-3/M821.021971
7-1/M820.924090.476
7-2/M820.493920.388
9-3-2/M820.901231

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.225690.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.009111
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.260280.426
WT/WTpooled1.94866

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.092270.846
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.149991
DC3000/delta hrp 24h0.946940.575

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.79418

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.072950.782
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row11.0521
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row10.80812
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row10.847540.691
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNI1.07484
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.677390.261
transgenic ySAMdc/azygous control (breaker)1.138281
transgenic ySAMdc/azygous control (red)1.09310.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.956040.256

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.10771

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.016831
Manapal/WT (red)1.08081