Expression of 1-1-5.1.3.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13776 | 0.697 |
27DAP/17DAP | 1.20089 | 0.809 |
39DAP/27DAP | 1.47133 | 0.191 |
41DAP/39DAP | 1.20992 | 0.54 |
42DAP/41DAP | 1.1498 | 0.882 |
43DAP/42DAP | 1.06561 | 1 |
47DAP/43DAP | 1.56143 | 0.384 |
52DAP/47DAP | 0.77625 | 0.498 |
57DAP/52DAP | 1.13803 | 0.987 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83529 | 0.067 |
17DAP/reference | 0.77896 | 0.02 |
27DAP/reference | 0.75601 | 0.109 |
39DAP/reference | 0.93833 | 0.624 |
41DAP/reference | 0.67785 | 0.201 |
42DAP/reference | 1.01212 | 1 |
43DAP/reference | 1.50719 | |
47DAP/reference | 1.29627 | 0.646 |
52DAP/reference | 1.10166 | 0.576 |
57DAP/reference | 1.08108 | 0.701 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.75475 | 0.247 |
27DAP/17DAP | 0.94323 | 0.878 |
39DAP/27DAP | 1.14175 | 0.499 |
41DAP/39DAP | 0.93118 | 0.849 |
42DAP/41DAP | 1.43597 | 0.02 |
43DAP/42DAP | 1.7035 | 0.017 |
47DAP/43DAP | 1.36546 | 0.019 |
52DAP/47DAP | 0.98594 | 0.907 |
57DAP/52DAP | 0.6623 | 0.049 |
57DAP/7DAP | 1.31181 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94114 | 0.246 |
17DAP/reference | 1.10258 | 0.437 |
27DAP/reference | 1.10842 | 0.804 |
39DAP/reference | 1.2283 | 0.107 |
41DAP/reference | 1.24595 | 0.191 |
42DAP/reference | 1.28695 | 0.059 |
43DAP/reference | 1.34872 | 0.083 |
47DAP/reference | 1.59198 | 0.019 |
52DAP/reference | 1.19477 | 0.328 |
57DAP/reference | 0.99372 | 0.549 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93736 | 0.475 |
17DAP/reference | 0.92532 | 0.182 |
27DAP/reference | 1.02784 | 1 |
39DAP/reference | 1.03504 | 1 |
41DAP/reference | 1.03871 | 1 |
42DAP/reference | 1.02318 | 1 |
43DAP/reference | 0.87872 | 0.147 |
47DAP/reference | 0.90006 | 0.068 |
52DAP/reference | 0.98154 | 0.5 |
57DAP/reference | 1.0308 | 0.93 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98136 | 0.607 |
17DAP/reference | 0.97067 | 0.624 |
27DAP/reference | 0.9451 | 0.27 |
39DAP/reference | 1.01907 | 1 |
41DAP/reference | 1.14596 | 0.257 |
42DAP/reference | 1.25586 | 0.067 |
43DAP/reference | 1.02045 | 0.949 |
47DAP/reference | 1.14115 | 0.294 |
52DAP/reference | 1.35084 | 0.228 |
57DAP/reference | 1.03699 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.22355 | 0.878 |
26DAP/20DAP | 2.02915 | 0.099 |
34DAP/26DAP | 1.25353 | 0.542 |
51DAP/34DAP | 3.1244 | 0.031 |
52DAP/51DAP | 0.68723 | 0.151 |
53DAP/52DAP | 0.92167 | 0.631 |
55DAP/53DAP | 0.74013 | 0.144 |
57DAP/55DAP | 1.11594 | 0.728 |
62DAP/57DAP | 1.53611 | |
68DAP/62DAP | 0.92713 | 0.769 |
68DAP/14DAP | 1.99414 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.3143 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.17903 | 0.063 |
Mature Green Tomato/Ripe Tomato | 0.30253 | 0.017 |
Immature Eggplant/Mature Eggplant | 7.53783 | |
Ripe Pepper/Ripe Tomato | 0.32993 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.21222 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.6935 | 0.877 |
1-1-2/M82 | 1.16172 | 1 |
12-2/M82 | 1.11025 | 1 |
12-4/M82 | 1.57098 | 1 |
1-3/M82 | 2.84059 | 0.255 |
2-1-1/M82 | 1.15478 | 0.764 |
2-1/M82 | 0.72187 | 0.519 |
2-6/M82 | 0.85157 | 1 |
3-2/M82 | 0.90113 | |
4-1-1/M82 | 0.9955 | 1 |
4-1/M82 | 1.06029 | 1 |
4-3-2/M82 | 1.07054 | |
4-3/M82 | 1.39589 | 1 |
5-3/M82 | 1.05795 | 1 |
6-2/M82 | 1.64283 | 1 |
6-3/M82 | 1.13762 | 1 |
7-1/M82 | 0.96323 | 1 |
7-2/M82 | 1.16005 | 0.318 |
9-3-2/M82 | 1.36163 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.14191 | 0.365 |
IL2-6/WTpooled | 0.89268 | 0.473 |
IL7-5/WTpooled | 1.15819 | 0.75 |
IL7-3/WTpooled | 1.12022 | 0.362 |
IL12-4/WTpooled | 1.14143 | 0.673 |
IL1-4/WTpooled | 1.00371 | 1 |
WT/WTpooled | 1.10886 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.74303 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95663 | 1 |
DC3000/delta hrp 6h | 0.54845 | |
DC3000/delta hrp 12h | 0.61547 | |
DC3000/delta hrp 24h | 0.8935 | 0.387 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.12933 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | 1.07299 | 0.908 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 0.87277 | 0.586 |
Time course 12hI-12hNI | 0.943 | 0.746 |
Time course 36hI-36hNI | 1.14564 | 0.355 |
Time course 60hI-60hNI | 0.5209 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.86567 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 0.94388 | 1 |
transgenic ySAMdc/azygous control (red) | 0.92329 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93502 | 0.112 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.09392 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.47696 | 0.105 |
Manapal/WT (break) | 0.81617 | 1 |
Manapal/WT (red) | 0.82466 | 0.181 |
|
|