Expression of 1-1-5.1.3.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.137760.697
27DAP/17DAP1.200890.809
39DAP/27DAP1.471330.191
41DAP/39DAP1.209920.54
42DAP/41DAP1.14980.882
43DAP/42DAP1.065611
47DAP/43DAP1.561430.384
52DAP/47DAP0.776250.498
57DAP/52DAP1.138030.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.835290.067
17DAP/reference0.778960.02
27DAP/reference0.756010.109
39DAP/reference0.938330.624
41DAP/reference0.677850.201
42DAP/reference1.012121
43DAP/reference1.50719
47DAP/reference1.296270.646
52DAP/reference1.101660.576
57DAP/reference1.081080.701

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.754750.247
27DAP/17DAP0.943230.878
39DAP/27DAP1.141750.499
41DAP/39DAP0.931180.849
42DAP/41DAP1.435970.02
43DAP/42DAP1.70350.017
47DAP/43DAP1.365460.019
52DAP/47DAP0.985940.907
57DAP/52DAP0.66230.049
57DAP/7DAP1.311810.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.941140.246
17DAP/reference1.102580.437
27DAP/reference1.108420.804
39DAP/reference1.22830.107
41DAP/reference1.245950.191
42DAP/reference1.286950.059
43DAP/reference1.348720.083
47DAP/reference1.591980.019
52DAP/reference1.194770.328
57DAP/reference0.993720.549

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.937360.475
17DAP/reference0.925320.182
27DAP/reference1.027841
39DAP/reference1.035041
41DAP/reference1.038711
42DAP/reference1.023181
43DAP/reference0.878720.147
47DAP/reference0.900060.068
52DAP/reference0.981540.5
57DAP/reference1.03080.93

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.981360.607
17DAP/reference0.970670.624
27DAP/reference0.94510.27
39DAP/reference1.019071
41DAP/reference1.145960.257
42DAP/reference1.255860.067
43DAP/reference1.020450.949
47DAP/reference1.141150.294
52DAP/reference1.350840.228
57DAP/reference1.036991

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.223550.878
26DAP/20DAP2.029150.099
34DAP/26DAP1.253530.542
51DAP/34DAP3.12440.031
52DAP/51DAP0.687230.151
53DAP/52DAP0.921670.631
55DAP/53DAP0.740130.144
57DAP/55DAP1.115940.728
62DAP/57DAP1.53611
68DAP/62DAP0.927130.769
68DAP/14DAP1.99414

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.31430.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.179030.063
Mature Green Tomato/Ripe Tomato0.302530.017
Immature Eggplant/Mature Eggplant7.53783
Ripe Pepper/Ripe Tomato0.329930.224
Mature Eggplant/Ripe Tomato0.212220.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.69350.877
1-1-2/M821.161721
12-2/M821.110251
12-4/M821.570981
1-3/M822.840590.255
2-1-1/M821.154780.764
2-1/M820.721870.519
2-6/M820.851571
3-2/M820.90113
4-1-1/M820.99551
4-1/M821.060291
4-3-2/M821.07054
4-3/M821.395891
5-3/M821.057951
6-2/M821.642831
6-3/M821.137621
7-1/M820.963231
7-2/M821.160050.318
9-3-2/M821.361631

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.141910.365
IL2-6/WTpooled0.892680.473
IL7-5/WTpooled1.158190.75
IL7-3/WTpooled1.120220.362
IL12-4/WTpooled1.141430.673
IL1-4/WTpooled1.003711
WT/WTpooled1.108861

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.74303

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.956631
DC3000/delta hrp 6h0.54845
DC3000/delta hrp 12h0.61547
DC3000/delta hrp 24h0.89350.387

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.129331
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row11.072990.908
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNI0.872770.586
Time course 12hI-12hNI0.9430.746
Time course 36hI-36hNI1.145640.355
Time course 60hI-60hNI0.52090.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.865670.3
transgenic ySAMdc/azygous control (breaker)0.943881
transgenic ySAMdc/azygous control (red)0.923291

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.935020.112

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.093921

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.476960.105
Manapal/WT (break)0.816171
Manapal/WT (red)0.824660.181