Expression of 1-1-5.1.3.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84043 | 0.389 |
27DAP/17DAP | 1.87161 | 0.741 |
39DAP/27DAP | 1.21509 | 0.995 |
41DAP/39DAP | 1.13754 | 0.22 |
42DAP/41DAP | 1.27287 | 0.737 |
43DAP/42DAP | 1.05819 | 1 |
47DAP/43DAP | 1.36899 | 0.463 |
52DAP/47DAP | 0.95291 | 0.774 |
57DAP/52DAP | 1.45138 | 0.76 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86511 | 0.073 |
17DAP/reference | 0.78401 | 0.129 |
27DAP/reference | 0.79894 | 0.359 |
39DAP/reference | 0.78722 | 0.149 |
41DAP/reference | 0.63625 | 0.085 |
42DAP/reference | 0.88767 | 0.107 |
43DAP/reference | 0.72175 | 0.555 |
47DAP/reference | 1.03861 | 1 |
52DAP/reference | 1.36531 | 0.012 |
57DAP/reference | 1.52263 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00864 | 0.847 |
27DAP/17DAP | 0.91754 | 0.748 |
39DAP/27DAP | 0.79514 | 0.061 |
41DAP/39DAP | 0.97061 | 0.973 |
42DAP/41DAP | 1.04054 | 0.924 |
43DAP/42DAP | 0.85237 | 0.116 |
47DAP/43DAP | 0.99038 | 0.909 |
52DAP/47DAP | 1.15871 | 0.58 |
57DAP/52DAP | 1.13824 | 0.714 |
57DAP/7DAP | 1.18698 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.52692 | 0.066 |
17DAP/reference | 0.45609 | 0.011 |
27DAP/reference | 0.51257 | 0.01 |
39DAP/reference | 0.37198 | 0.011 |
41DAP/reference | 0.45028 | 0.015 |
42DAP/reference | 0.53266 | 0.013 |
43DAP/reference | 0.48057 | 0.011 |
47DAP/reference | 0.74524 | 0.222 |
52DAP/reference | 0.40068 | 0.01 |
57DAP/reference | 0.57499 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91088 | 0.374 |
17DAP/reference | 0.84568 | 0.075 |
27DAP/reference | 0.99413 | 0.598 |
39DAP/reference | 1.22106 | 0.17 |
41DAP/reference | 1.23289 | 0.015 |
42DAP/reference | 1.10553 | 0.369 |
43DAP/reference | 0.95967 | 0.494 |
47DAP/reference | 0.83294 | 0.214 |
52DAP/reference | 1.18649 | 0.444 |
57DAP/reference | 0.82489 | 0.043 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.50626 | 0.032 |
17DAP/reference | 0.751 | 0.132 |
27DAP/reference | 0.61598 | 0.03 |
39DAP/reference | 0.64986 | 0.022 |
41DAP/reference | 0.54723 | 0.019 |
42DAP/reference | 0.6223 | 0.049 |
43DAP/reference | 0.66605 | 0.041 |
47DAP/reference | 0.89123 | 0.199 |
52DAP/reference | 0.62688 | 0.064 |
57DAP/reference | 1.19124 | 0.285 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96243 | 1 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.19398 | 1 |
51DAP/34DAP | 0.57075 | 0.323 |
52DAP/51DAP | N/A | N/A |
53DAP/52DAP | 1.23229 | 0.608 |
55DAP/53DAP | 0.89819 | 0.82 |
57DAP/55DAP | 0.73361 | 0.521 |
62DAP/57DAP | 0.76651 | |
68DAP/62DAP | 0.88352 | 0.152 |
68DAP/14DAP | 3.59156 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.53618 | 0.151 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.99954 | 1 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.63402 | |
Mature Eggplant/Ripe Tomato | 1.01101 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.02373 | 0.694 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.02578 | 0.37 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.81621 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06507 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.2888 | |
DC3000/delta hrp 6h | 0.65285 | 0.95 |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 1.82989 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.10509 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.99849 | 1 |
Var 12h I row2-row1 | 0.69159 | 0.363 |
Var 12h NI row2-row1 | 0.9537 | 0.82 |
Var 36h I row2-row1 | 0.82903 | 1 |
Var 36h NI row2-row1 | 1.79774 | 0.482 |
Var 60h I row2-row1 | 1.04651 | |
Var 60h NI row2-row1 | 0.92648 | 0.756 |
Time course 0hI-0hNI | 1.01088 | 0.867 |
Time course 12hI-12hNI | 0.91117 | 0.338 |
Time course 36hI-36hNI | 0.78021 | 0.023 |
Time course 60hI-60hNI | 0.14038 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13204 | 0.212 |
transgenic ySAMdc/azygous control (breaker) | 1.25345 | 1 |
transgenic ySAMdc/azygous control (red) | 0.78013 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0329 | 0.587 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.83379 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88844 | 1 |
Manapal/WT (break) | 1.05792 | 1 |
Manapal/WT (red) | 1.17742 | 0.142 |
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