Expression of 1-1-5.1.3.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.840430.389
27DAP/17DAP1.871610.741
39DAP/27DAP1.215090.995
41DAP/39DAP1.137540.22
42DAP/41DAP1.272870.737
43DAP/42DAP1.058191
47DAP/43DAP1.368990.463
52DAP/47DAP0.952910.774
57DAP/52DAP1.451380.76

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.865110.073
17DAP/reference0.784010.129
27DAP/reference0.798940.359
39DAP/reference0.787220.149
41DAP/reference0.636250.085
42DAP/reference0.887670.107
43DAP/reference0.721750.555
47DAP/reference1.038611
52DAP/reference1.365310.012
57DAP/reference1.52263

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.008640.847
27DAP/17DAP0.917540.748
39DAP/27DAP0.795140.061
41DAP/39DAP0.970610.973
42DAP/41DAP1.040540.924
43DAP/42DAP0.852370.116
47DAP/43DAP0.990380.909
52DAP/47DAP1.158710.58
57DAP/52DAP1.138240.714
57DAP/7DAP1.186981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.526920.066
17DAP/reference0.456090.011
27DAP/reference0.512570.01
39DAP/reference0.371980.011
41DAP/reference0.450280.015
42DAP/reference0.532660.013
43DAP/reference0.480570.011
47DAP/reference0.745240.222
52DAP/reference0.400680.01
57DAP/reference0.574990.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.910880.374
17DAP/reference0.845680.075
27DAP/reference0.994130.598
39DAP/reference1.221060.17
41DAP/reference1.232890.015
42DAP/reference1.105530.369
43DAP/reference0.959670.494
47DAP/reference0.832940.214
52DAP/reference1.186490.444
57DAP/reference0.824890.043

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.506260.032
17DAP/reference0.7510.132
27DAP/reference0.615980.03
39DAP/reference0.649860.022
41DAP/reference0.547230.019
42DAP/reference0.62230.049
43DAP/reference0.666050.041
47DAP/reference0.891230.199
52DAP/reference0.626880.064
57DAP/reference1.191240.285

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.962431
26DAP/20DAPN/AN/A
34DAP/26DAP1.193981
51DAP/34DAP0.570750.323
52DAP/51DAPN/AN/A
53DAP/52DAP1.232290.608
55DAP/53DAP0.898190.82
57DAP/55DAP0.733610.521
62DAP/57DAP0.76651
68DAP/62DAP0.883520.152
68DAP/14DAP3.59156

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.536180.151

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.999541
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.63402
Mature Eggplant/Ripe Tomato1.011011

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.023730.694
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.025780.37
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.816211
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.065071

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.2888
DC3000/delta hrp 6h0.652850.95
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.829890.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.105091

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.998491
Var 12h I row2-row10.691590.363
Var 12h NI row2-row10.95370.82
Var 36h I row2-row10.829031
Var 36h NI row2-row11.797740.482
Var 60h I row2-row11.04651
Var 60h NI row2-row10.926480.756
Time course 0hI-0hNI1.010880.867
Time course 12hI-12hNI0.911170.338
Time course 36hI-36hNI0.780210.023
Time course 60hI-60hNI0.140380.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.132040.212
transgenic ySAMdc/azygous control (breaker)1.253451
transgenic ySAMdc/azygous control (red)0.780131

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.03290.587

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.833790.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.888441
Manapal/WT (break)1.057921
Manapal/WT (red)1.177420.142