Expression of 1-1-5.1.4.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24727 | 0.414 |
27DAP/17DAP | 0.96887 | 0.939 |
39DAP/27DAP | 1.21289 | 0.501 |
41DAP/39DAP | 0.97931 | 0.862 |
42DAP/41DAP | 0.74142 | 0.397 |
43DAP/42DAP | 1.11538 | 1 |
47DAP/43DAP | 1.03022 | 0.876 |
52DAP/47DAP | 1.54196 | 0.381 |
57DAP/52DAP | 1.36239 | 0.669 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7624 | 0.024 |
17DAP/reference | 0.94409 | 0.368 |
27DAP/reference | 1.14471 | 0.049 |
39DAP/reference | 1.2628 | 0.108 |
41DAP/reference | 1.1012 | 0.287 |
42DAP/reference | 0.83735 | 0.139 |
43DAP/reference | 0.85375 | |
47DAP/reference | 0.81606 | 0.038 |
52DAP/reference | 1.10606 | 0.079 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10289 | 0.445 |
27DAP/17DAP | 0.98944 | 0.943 |
39DAP/27DAP | 1.14865 | 0.378 |
41DAP/39DAP | 1.04627 | 0.849 |
42DAP/41DAP | 0.88259 | 0.3 |
43DAP/42DAP | 1.01692 | 0.788 |
47DAP/43DAP | 1.12287 | 0.848 |
52DAP/47DAP | 1.32406 | 0.264 |
57DAP/52DAP | 0.98996 | 0.828 |
57DAP/7DAP | 1.20128 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.01892 | 0.03 |
17DAP/reference | 2.80998 | 0.006 |
27DAP/reference | 2.43868 | 0.006 |
39DAP/reference | 3.22828 | 0.005 |
41DAP/reference | 3.30345 | 0.01 |
42DAP/reference | 4.35205 | 0.006 |
43DAP/reference | 4.12102 | 0.006 |
47DAP/reference | 2.3396 | 0.145 |
52DAP/reference | 3.26428 | 0.007 |
57DAP/reference | 2.87703 | 0.017 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95947 | 0.655 |
17DAP/reference | 0.88671 | 0.239 |
27DAP/reference | 1.06407 | 0.735 |
39DAP/reference | 1.02349 | 1 |
41DAP/reference | 1.10108 | 0.353 |
42DAP/reference | 0.94021 | 0.169 |
43DAP/reference | 0.8326 | 0.135 |
47DAP/reference | 1.01045 | 1 |
52DAP/reference | 0.90755 | 0.38 |
57DAP/reference | 0.83242 | 0.068 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.39593 | 0.023 |
17DAP/reference | 1.56206 | 0.456 |
27DAP/reference | 2.99423 | 0.017 |
39DAP/reference | 2.44596 | 0.014 |
41DAP/reference | 2.68889 | 0.006 |
42DAP/reference | 2.46027 | 0.025 |
43DAP/reference | 2.46941 | 0.022 |
47DAP/reference | 1.02272 | 0.562 |
52DAP/reference | 2.70014 | 0.182 |
57DAP/reference | 2.02895 | 0.157 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05803 | 0.966 |
26DAP/20DAP | 1.43947 | 0.13 |
34DAP/26DAP | 0.86743 | 0.61 |
51DAP/34DAP | 1.12788 | 0.637 |
52DAP/51DAP | 0.8034 | 1 |
53DAP/52DAP | 1.09896 | 0.723 |
55DAP/53DAP | 1.12507 | 0.422 |
57DAP/55DAP | 1.00793 | 1 |
62DAP/57DAP | 3.08094 | |
68DAP/62DAP | 1.49213 | 0.115 |
68DAP/14DAP | 1.06452 | 0.958 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.10874 | 0.821 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.11959 | 0.666 |
Mature Green Tomato/Ripe Tomato | 1.28068 | 0.134 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.88307 | 1 |
Mature Eggplant/Ripe Tomato | 0.56098 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95207 | |
1-1-2/M82 | 0.81542 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.06087 | 1 |
1-3/M82 | 1.13154 | |
2-1-1/M82 | 0.97698 | |
2-1/M82 | 0.55757 | |
2-6/M82 | 0.77068 | 0.501 |
3-2/M82 | 1.39459 | |
4-1-1/M82 | 0.52543 | |
4-1/M82 | 0.82865 | 1 |
4-3-2/M82 | 0.76689 | |
4-3/M82 | 0.55705 | 0.466 |
5-3/M82 | 1.29209 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.14371 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.12218 | |
9-3-2/M82 | 0.78302 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.80921 | 0.321 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.00522 | 1 |
IL7-3/WTpooled | 1.14242 | 1 |
IL12-4/WTpooled | 1.09984 | 0.785 |
IL1-4/WTpooled | 0.97574 | 1 |
WT/WTpooled | 0.90919 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.90311 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09207 | 0.921 |
DC3000/delta hrp 6h | 1.009 | 0.95 |
DC3000/delta hrp 12h | 0.98454 | 1 |
DC3000/delta hrp 24h | 0.98393 | 0.957 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1291 | 1 |
Exp 36h | 0.97449 | 1 |
Exp 60h | 1.06702 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99861 | 1 |
Var 0h | 0.96407 | 1 |
Var 12h I row2-row1 | 0.79346 | 0.344 |
Var 12h NI row2-row1 | 1.02338 | 1 |
Var 36h I row2-row1 | 0.93497 | 0.805 |
Var 36h NI row2-row1 | 1.21381 | 0.253 |
Var 60h I row2-row1 | 0.93473 | 0.832 |
Var 60h NI row2-row1 | 0.97148 | 1 |
Time course 0hI-0hNI | 0.99051 | 1 |
Time course 12hI-12hNI | 0.91388 | 0.435 |
Time course 36hI-36hNI | 0.77749 | 0.03 |
Time course 60hI-60hNI | 0.20319 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92258 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 1.46435 | 0.166 |
transgenic ySAMdc/azygous control (red) | 1.06479 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01414 | 0.656 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.03075 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.79639 | 0.172 |
Manapal/WT (break) | 0.9235 | 1 |
Manapal/WT (red) | 1.61344 | 0.15 |
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