Expression of 1-1-5.1.4.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.247270.414
27DAP/17DAP0.968870.939
39DAP/27DAP1.212890.501
41DAP/39DAP0.979310.862
42DAP/41DAP0.741420.397
43DAP/42DAP1.115381
47DAP/43DAP1.030220.876
52DAP/47DAP1.541960.381
57DAP/52DAP1.362390.669

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.76240.024
17DAP/reference0.944090.368
27DAP/reference1.144710.049
39DAP/reference1.26280.108
41DAP/reference1.10120.287
42DAP/reference0.837350.139
43DAP/reference0.85375
47DAP/reference0.816060.038
52DAP/reference1.106060.079
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.102890.445
27DAP/17DAP0.989440.943
39DAP/27DAP1.148650.378
41DAP/39DAP1.046270.849
42DAP/41DAP0.882590.3
43DAP/42DAP1.016920.788
47DAP/43DAP1.122870.848
52DAP/47DAP1.324060.264
57DAP/52DAP0.989960.828
57DAP/7DAP1.201280.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.018920.03
17DAP/reference2.809980.006
27DAP/reference2.438680.006
39DAP/reference3.228280.005
41DAP/reference3.303450.01
42DAP/reference4.352050.006
43DAP/reference4.121020.006
47DAP/reference2.33960.145
52DAP/reference3.264280.007
57DAP/reference2.877030.017

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.959470.655
17DAP/reference0.886710.239
27DAP/reference1.064070.735
39DAP/reference1.023491
41DAP/reference1.101080.353
42DAP/reference0.940210.169
43DAP/reference0.83260.135
47DAP/reference1.010451
52DAP/reference0.907550.38
57DAP/reference0.832420.068

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.395930.023
17DAP/reference1.562060.456
27DAP/reference2.994230.017
39DAP/reference2.445960.014
41DAP/reference2.688890.006
42DAP/reference2.460270.025
43DAP/reference2.469410.022
47DAP/reference1.022720.562
52DAP/reference2.700140.182
57DAP/reference2.028950.157

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.058030.966
26DAP/20DAP1.439470.13
34DAP/26DAP0.867430.61
51DAP/34DAP1.127880.637
52DAP/51DAP0.80341
53DAP/52DAP1.098960.723
55DAP/53DAP1.125070.422
57DAP/55DAP1.007931
62DAP/57DAP3.08094
68DAP/62DAP1.492130.115
68DAP/14DAP1.064520.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.108740.821

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.119590.666
Mature Green Tomato/Ripe Tomato1.280680.134
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.883071
Mature Eggplant/Ripe Tomato0.560981

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.95207
1-1-2/M820.81542
12-2/M82N/AN/A
12-4/M821.060871
1-3/M821.13154
2-1-1/M820.97698
2-1/M820.55757
2-6/M820.770680.501
3-2/M821.39459
4-1-1/M820.52543
4-1/M820.828651
4-3-2/M820.76689
4-3/M820.557050.466
5-3/M821.292091
6-2/M82N/AN/A
6-3/M821.143711
7-1/M82N/AN/A
7-2/M821.12218
9-3-2/M820.783020.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.809210.321
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.005221
IL7-3/WTpooled1.142421
IL12-4/WTpooled1.099840.785
IL1-4/WTpooled0.975741
WT/WTpooled0.909191

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.903110.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.092070.921
DC3000/delta hrp 6h1.0090.95
DC3000/delta hrp 12h0.984541
DC3000/delta hrp 24h0.983930.957

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.12911
Exp 36h0.974491
Exp 60h1.067021

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.998611
Var 0h0.964071
Var 12h I row2-row10.793460.344
Var 12h NI row2-row11.023381
Var 36h I row2-row10.934970.805
Var 36h NI row2-row11.213810.253
Var 60h I row2-row10.934730.832
Var 60h NI row2-row10.971481
Time course 0hI-0hNI0.990511
Time course 12hI-12hNI0.913880.435
Time course 36hI-36hNI0.777490.03
Time course 60hI-60hNI0.203190.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.922580.324
transgenic ySAMdc/azygous control (breaker)1.464350.166
transgenic ySAMdc/azygous control (red)1.064790.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.014140.656

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.030751

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.796390.172
Manapal/WT (break)0.92351
Manapal/WT (red)1.613440.15