Expression of 1-1-5.1.4.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.432090.359
27DAP/17DAP1.155490.873
39DAP/27DAP1.42960.38
41DAP/39DAP0.908490.619
42DAP/41DAP0.753850.774
43DAP/42DAP1.073231
47DAP/43DAP1.151420.965
52DAP/47DAP0.977070.812
57DAP/52DAP1.342940.962

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.773290.024
17DAP/reference1.030950.717
27DAP/reference1.22680.071
39DAP/reference0.944990.638
41DAP/reference1.016690.667
42DAP/reference0.832270.124
43DAP/reference0.764630.429
47DAP/reference0.930810.207
52DAP/reference1.394920.008
57DAP/reference0.474220.082

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.474050.042
27DAP/17DAP1.266130.187
39DAP/27DAP0.861950.121
41DAP/39DAP1.14130.807
42DAP/41DAP1.035610.852
43DAP/42DAP0.778870.029
47DAP/43DAP0.974670.909
52DAP/47DAP1.037330.939
57DAP/52DAP1.132750.567
57DAP/7DAP1.07991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.820930.024
17DAP/reference1.889250.006
27DAP/reference1.523870.007
39DAP/reference1.678340.006
41DAP/reference1.56980.012
42DAP/reference1.601940.013
43DAP/reference1.243060.066
47DAP/reference1.262820.127
52DAP/reference1.090090.491
57DAP/reference1.117550.061

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.855640.296
17DAP/reference0.979250.626
27DAP/reference0.906340.304
39DAP/reference1.140230.247
41DAP/reference1.186240.327
42DAP/reference1.044020.634
43DAP/reference0.776180.054
47DAP/reference1.02530.658
52DAP/reference1.049320.417
57DAP/reference1.293610.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference4.274120.023
17DAP/reference1.139170.62
27DAP/reference1.836080.052
39DAP/reference1.459270.019
41DAP/reference1.369160.077
42DAP/reference3.388690.114
43DAP/reference3.846320.035
47DAP/reference0.874940.199
52DAP/reference4.958210.091
57DAP/reference2.240880.029

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.05651
26DAP/20DAP1.60580.176
34DAP/26DAP0.873660.548
51DAP/34DAP0.843770.442
52DAP/51DAP1.22950.048
53DAP/52DAP0.959810.844
55DAP/53DAP0.668880.03
57DAP/55DAP1.203550.728
62DAP/57DAP1.96176
68DAP/62DAP0.74137
68DAP/14DAP0.79143

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.592510.246

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.431940.176
Mature Green Tomato/Ripe Tomato2.336430.03
Immature Eggplant/Mature Eggplant1.110750.288
Ripe Pepper/Ripe Tomato0.699270.224
Mature Eggplant/Ripe Tomato2.080350.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.74764
1-1-2/M821.006041
12-2/M820.52218
12-4/M821.128570.655
1-3/M821.235230.277
2-1-1/M820.872510.465
2-1/M820.96697
2-6/M821.199520.594
3-2/M821.12215
4-1-1/M821.102391
4-1/M820.83642
4-3-2/M820.975771
4-3/M820.751640.611
5-3/M821.099641
6-2/M821.202021
6-3/M820.972771
7-1/M821.269910.598
7-2/M821.24928
9-3-2/M821.10684

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.329420.277
IL2-6/WTpooled0.898050.473
IL7-5/WTpooled0.831231
IL7-3/WTpooled1.100361
IL12-4/WTpooled1.086880.785
IL1-4/WTpooled0.950671
WT/WTpooled1.057991

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.893860.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.111410.894
DC3000/delta hrp 6h0.97880.95
DC3000/delta hrp 12h0.968941
DC3000/delta hrp 24h1.09860.336

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.983991
DC3000 delta B/DC3000 delta AB0.999341

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.994281
Exp 36h1.173471
Exp 60h0.990531

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.989651
Var 0h0.956431
Var 12h I row2-row10.860890.77
Var 12h NI row2-row10.964510.906
Var 36h I row2-row10.925091
Var 36h NI row2-row11.127360.482
Var 60h I row2-row11.007451
Var 60h NI row2-row10.982121
Time course 0hI-0hNI1.010691
Time course 12hI-12hNI0.997961
Time course 36hI-36hNI1.039920.651
Time course 60hI-60hNI0.620340.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.992030.862
transgenic ySAMdc/azygous control (breaker)0.957231
transgenic ySAMdc/azygous control (red)1.025931

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.972260.588

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.034631

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.506930.172
Manapal/WT (break)0.595010.299
Manapal/WT (red)1.243111