Expression of 1-1-5.1.6.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87769 | 0.511 |
27DAP/17DAP | 1.03737 | 0.916 |
39DAP/27DAP | 1.24842 | 0.658 |
41DAP/39DAP | 0.87452 | 0.52 |
42DAP/41DAP | 1.33662 | 0.868 |
43DAP/42DAP | 0.86658 | 0.754 |
47DAP/43DAP | 1.09481 | 0.889 |
52DAP/47DAP | 1.41079 | 0.581 |
57DAP/52DAP | 1.07023 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05677 | 0.11 |
17DAP/reference | 1.15088 | 0.04 |
27DAP/reference | 1.0494 | 0.322 |
39DAP/reference | 1.02274 | 0.722 |
41DAP/reference | 1.15187 | 0.014 |
42DAP/reference | 1.0045 | 1 |
43DAP/reference | 1.01023 | 0.838 |
47DAP/reference | 0.9486 | 0.224 |
52DAP/reference | 0.86061 | 0.162 |
57DAP/reference | 0.75616 | 0.059 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90405 | 0.454 |
27DAP/17DAP | 1.23655 | 0.187 |
39DAP/27DAP | 0.87413 | 0.502 |
41DAP/39DAP | 1.37375 | 0.063 |
42DAP/41DAP | 0.92091 | 0.473 |
43DAP/42DAP | 1.06013 | 1 |
47DAP/43DAP | 1.15686 | 0.812 |
52DAP/47DAP | 1.09959 | 0.8 |
57DAP/52DAP | 1.8235 | 0.039 |
57DAP/7DAP | 1.02598 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92662 | 0.157 |
17DAP/reference | 1.07176 | 1 |
27DAP/reference | 0.78197 | 0.062 |
39DAP/reference | 0.82616 | 0.17 |
41DAP/reference | 0.84579 | 0.247 |
42DAP/reference | 0.86592 | 0.2 |
43DAP/reference | 0.95927 | 0.403 |
47DAP/reference | 0.91523 | 0.168 |
52DAP/reference | 0.98348 | 0.523 |
57DAP/reference | 1.12705 | 0.41 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12509 | 0.139 |
17DAP/reference | 1.03482 | 0.496 |
27DAP/reference | 0.99501 | 0.686 |
39DAP/reference | 1.01115 | 1 |
41DAP/reference | 0.90519 | 0.057 |
42DAP/reference | 0.92867 | 0.261 |
43DAP/reference | 1.0137 | 0.892 |
47DAP/reference | 0.98809 | 0.5 |
52DAP/reference | 1.07903 | 0.181 |
57DAP/reference | 1.11648 | 0.03 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.38335 | 0.025 |
17DAP/reference | 0.98401 | 0.751 |
27DAP/reference | 1.05624 | 0.749 |
39DAP/reference | 0.83374 | 0.199 |
41DAP/reference | 0.86707 | 0.132 |
42DAP/reference | 0.87237 | 0.287 |
43DAP/reference | 0.93954 | 0.468 |
47DAP/reference | 0.89988 | 0.24 |
52DAP/reference | 0.77893 | 0.242 |
57DAP/reference | 1.78174 | 0.753 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09291 | 0.966 |
26DAP/20DAP | 0.75076 | |
34DAP/26DAP | 0.9316 | 0.848 |
51DAP/34DAP | 0.94512 | 0.758 |
52DAP/51DAP | 1.27335 | |
53DAP/52DAP | 1.29825 | 0.307 |
55DAP/53DAP | 1.37449 | 0.813 |
57DAP/55DAP | 0.81516 | 0.508 |
62DAP/57DAP | 1.07941 | |
68DAP/62DAP | 0.90229 | 0.834 |
68DAP/14DAP | 1.01616 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.57871 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.91308 | 0.611 |
Immature Eggplant/Mature Eggplant | 1.17418 | 0.101 |
Ripe Pepper/Ripe Tomato | 0.58731 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.01303 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.93709 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.12521 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.91598 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.96103 | 1 |
IL12-4/WTpooled | 0.92243 | 1 |
IL1-4/WTpooled | 0.92753 | |
WT/WTpooled | 1.04593 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.08711 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0275 | 1 |
DC3000/delta hrp 6h | 0.95081 | 0.95 |
DC3000/delta hrp 12h | 1.28632 | 1 |
DC3000/delta hrp 24h | 1.05682 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.80939 | 1 |
Exp 36h | 1.45352 | 1 |
Exp 60h | 1.18923 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.22646 | 1 |
Var 0h | 1.01382 | 0.98 |
Var 12h I row2-row1 | 1.17599 | 0.506 |
Var 12h NI row2-row1 | 0.8038 | 1 |
Var 36h I row2-row1 | 1.16572 | 0.742 |
Var 36h NI row2-row1 | 1.605 | 1 |
Var 60h I row2-row1 | 0.94428 | 0.439 |
Var 60h NI row2-row1 | 0.81079 | 0.977 |
Time course 0hI-0hNI | 1.13259 | 0.662 |
Time course 12hI-12hNI | 1.33718 | 0.044 |
Time course 36hI-36hNI | 2.0199 | 0.006 |
Time course 60hI-60hNI | 2.72496 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04461 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 1.343 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.17335 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01508 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.32219 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.72897 | 1 |
Manapal/WT (break) | 1.15469 | 1 |
Manapal/WT (red) | 1.05433 | 1 |
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