Expression of 1-1-5.1.6.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.877690.511
27DAP/17DAP1.037370.916
39DAP/27DAP1.248420.658
41DAP/39DAP0.874520.52
42DAP/41DAP1.336620.868
43DAP/42DAP0.866580.754
47DAP/43DAP1.094810.889
52DAP/47DAP1.410790.581
57DAP/52DAP1.070230.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.056770.11
17DAP/reference1.150880.04
27DAP/reference1.04940.322
39DAP/reference1.022740.722
41DAP/reference1.151870.014
42DAP/reference1.00451
43DAP/reference1.010230.838
47DAP/reference0.94860.224
52DAP/reference0.860610.162
57DAP/reference0.756160.059

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.904050.454
27DAP/17DAP1.236550.187
39DAP/27DAP0.874130.502
41DAP/39DAP1.373750.063
42DAP/41DAP0.920910.473
43DAP/42DAP1.060131
47DAP/43DAP1.156860.812
52DAP/47DAP1.099590.8
57DAP/52DAP1.82350.039
57DAP/7DAP1.025981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.926620.157
17DAP/reference1.071761
27DAP/reference0.781970.062
39DAP/reference0.826160.17
41DAP/reference0.845790.247
42DAP/reference0.865920.2
43DAP/reference0.959270.403
47DAP/reference0.915230.168
52DAP/reference0.983480.523
57DAP/reference1.127050.41

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.125090.139
17DAP/reference1.034820.496
27DAP/reference0.995010.686
39DAP/reference1.011151
41DAP/reference0.905190.057
42DAP/reference0.928670.261
43DAP/reference1.01370.892
47DAP/reference0.988090.5
52DAP/reference1.079030.181
57DAP/reference1.116480.03

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.383350.025
17DAP/reference0.984010.751
27DAP/reference1.056240.749
39DAP/reference0.833740.199
41DAP/reference0.867070.132
42DAP/reference0.872370.287
43DAP/reference0.939540.468
47DAP/reference0.899880.24
52DAP/reference0.778930.242
57DAP/reference1.781740.753

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.092910.966
26DAP/20DAP0.75076
34DAP/26DAP0.93160.848
51DAP/34DAP0.945120.758
52DAP/51DAP1.27335
53DAP/52DAP1.298250.307
55DAP/53DAP1.374490.813
57DAP/55DAP0.815160.508
62DAP/57DAP1.07941
68DAP/62DAP0.902290.834
68DAP/14DAP1.01616

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.578710.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.913080.611
Immature Eggplant/Mature Eggplant1.174180.101
Ripe Pepper/Ripe Tomato0.587310.293
Mature Eggplant/Ripe Tomato0.01303

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.93709
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.12521
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.915980.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.961031
IL12-4/WTpooled0.922431
IL1-4/WTpooled0.92753
WT/WTpooled1.045931

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.08711

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.02751
DC3000/delta hrp 6h0.950810.95
DC3000/delta hrp 12h1.286321
DC3000/delta hrp 24h1.056820.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.809391
Exp 36h1.453521
Exp 60h1.189230.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.226461
Var 0h1.013820.98
Var 12h I row2-row11.175990.506
Var 12h NI row2-row10.80381
Var 36h I row2-row11.165720.742
Var 36h NI row2-row11.6051
Var 60h I row2-row10.944280.439
Var 60h NI row2-row10.810790.977
Time course 0hI-0hNI1.132590.662
Time course 12hI-12hNI1.337180.044
Time course 36hI-36hNI2.01990.006
Time course 60hI-60hNI2.724960.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.044610.748
transgenic ySAMdc/azygous control (breaker)1.3430.178
transgenic ySAMdc/azygous control (red)1.173350.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.015080.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.322190.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.728971
Manapal/WT (break)1.154691
Manapal/WT (red)1.054331