Expression of 1-1-5.1.6.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.904250.543
27DAP/17DAP1.061871
39DAP/27DAP1.004870.857
41DAP/39DAP0.933040.697
42DAP/41DAP0.905271
43DAP/42DAP2.155030.736
47DAP/43DAP1.098530.689
52DAP/47DAP1.047060.973
57DAP/52DAP1.252250.918

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.966480.476
17DAP/reference1.073660.086
27DAP/reference0.993780.797
39DAP/reference1.021230.628
41DAP/reference1.056950.421
42DAP/reference0.916870.014
43DAP/reference1.001320.942
47DAP/reference1.007971
52DAP/reference0.932680.283
57DAP/reference0.945910.112

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.082110.749
27DAP/17DAP1.088540.9
39DAP/27DAP0.6760.055
41DAP/39DAP0.813470.481
42DAP/41DAP1.083460.824
43DAP/42DAP1.148170.413
47DAP/43DAP1.15610.765
52DAP/47DAP1.20670.508
57DAP/52DAP0.81540.326
57DAP/7DAP0.711271

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.575370.043
17DAP/reference1.539260.059
27DAP/reference1.12580.371
39DAP/reference1.029941
41DAP/reference0.944850.469
42DAP/reference1.041170.675
43DAP/reference1.256980.256
47DAP/reference0.953520.504
52DAP/reference1.369660.081
57DAP/reference1.116220.17

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.052340.704
17DAP/reference0.891850.164
27DAP/reference0.899650.144
39DAP/reference0.940740.281
41DAP/reference0.911220.098
42DAP/reference0.944190.321
43DAP/reference1.221180.809
47DAP/reference0.914490.053
52DAP/reference1.027740.667
57DAP/reference1.031960.688

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.678750.041
17DAP/reference1.130260.706
27DAP/reference1.208560.198
39DAP/reference1.201230.235
41DAP/reference1.255220.197
42DAP/reference1.052661
43DAP/reference0.988440.614
47DAP/reference0.852170.025
52DAP/reference1.030840.917
57DAP/reference0.809980.046

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.999961
26DAP/20DAP2.097680.103
34DAP/26DAP0.912380.848
51DAP/34DAP1.071780.909
52DAP/51DAP1.197330.676
53DAP/52DAP0.980710.882
55DAP/53DAP1.116340.898
57DAP/55DAP1.028841
62DAP/57DAP1.9627
68DAP/62DAP0.982750.914
68DAP/14DAP0.69804

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.119540.496

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.38790.058
Mature Green Tomato/Ripe Tomato0.736490.072
Immature Eggplant/Mature Eggplant0.898930.096
Ripe Pepper/Ripe Tomato1.06275
Mature Eggplant/Ripe Tomato2.313090.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.17757
1-1-2/M822.08226
12-2/M82N/AN/A
12-4/M821.064431
1-3/M820.59746
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.820121
3-2/M821.11006
4-1-1/M82N/AN/A
4-1/M821.87728
4-3-2/M82N/AN/A
4-3/M821.15246
5-3/M820.904340.49
6-2/M82N/AN/A
6-3/M821.36105
7-1/M820.74085
7-2/M820.70916
9-3-2/M821.23268

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.99419
IL2-6/WTpooled1.120720.659
IL7-5/WTpooled1.731460.67
IL7-3/WTpooled0.757370.418
IL12-4/WTpooled1.004721
IL1-4/WTpooled1.009071
WT/WTpooled1.042671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.932120.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.046031
DC3000/delta hrp 6h1.109111
DC3000/delta hrp 12h1.146041
DC3000/delta hrp 24h1.02540.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.417850.296

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.706540.328
Exp 36h1.064311
Exp 60h0.936410.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.13531
Var 0h0.910911
Var 12h I row2-row10.940.39
Var 12h NI row2-row11.01891
Var 36h I row2-row10.90412
Var 36h NI row2-row10.89438
Var 60h I row2-row10.946370.582
Var 60h NI row2-row10.522450.38
Time course 0hI-0hNI0.857440.195
Time course 12hI-12hNI1.025110.818
Time course 36hI-36hNI1.239070.316
Time course 60hI-60hNI1.362630.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.050970.297
transgenic ySAMdc/azygous control (breaker)1.012971
transgenic ySAMdc/azygous control (red)0.955421

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.980730.418

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.024651
Manapal/WT (break)0.968761
Manapal/WT (red)1.409060.413