Expression of 1-1-5.1.6.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.896450.532
27DAP/17DAP0.871290.622
39DAP/27DAP1.184150.553
41DAP/39DAP1.012840.921
42DAP/41DAP1.16710.882
43DAP/42DAP1.088430.993
47DAP/43DAP0.88510.625
52DAP/47DAP0.910990.729
57DAP/52DAP1.092830.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.984970.616
17DAP/reference0.859080.025
27DAP/reference0.874660.163
39DAP/reference0.838540.024
41DAP/reference0.6880.018
42DAP/reference0.947190.182
43DAP/reference0.934790.316
47DAP/reference0.993080.602
52DAP/reference1.130450.388
57DAP/reference1.261710.012

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.985060.763
27DAP/17DAP0.996290.969
39DAP/27DAP0.819630.054
41DAP/39DAP1.064340.887
42DAP/41DAP1.120180.354
43DAP/42DAP1.291190.23
47DAP/43DAP1.00621
52DAP/47DAP0.967520.886
57DAP/52DAP0.925230.272
57DAP/7DAP0.647161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.221950.09
17DAP/reference1.139460.896
27DAP/reference1.002930.8
39DAP/reference0.892990.146
41DAP/reference0.91490.284
42DAP/reference0.858140.031
43DAP/reference1.028660.83
47DAP/reference1.284770.026
52DAP/reference0.888270.254
57DAP/reference0.949560.341

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.02831
17DAP/reference0.93610.367
27DAP/reference1.133980.2
39DAP/reference1.088260.571
41DAP/reference1.174880.043
42DAP/reference1.132120.207
43DAP/reference0.838370.17
47DAP/reference1.13280.264
52DAP/reference0.90630.171
57DAP/reference0.837490.068

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.192660.347
17DAP/reference0.930520.374
27DAP/reference0.947870.286
39DAP/reference0.972720.544
41DAP/reference1.020851
42DAP/reference1.181310.333
43DAP/reference1.054370.949
47DAP/reference0.893520.224
52DAP/reference0.978230.704
57DAP/reference1.484860.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.156720.966
26DAP/20DAP1.399640.121
34DAP/26DAP0.847090.095
51DAP/34DAP1.298810.059
52DAP/51DAP1.000331
53DAP/52DAP1.066471
55DAP/53DAP0.682220.021
57DAP/55DAP1.309620.474
62DAP/57DAP1.23163
68DAP/62DAP1.75433
68DAP/14DAP2.360810.016

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.220040.172

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.242420.058
Mature Green Tomato/Ripe Tomato1.256270.478
Immature Eggplant/Mature Eggplant1.413620.05
Ripe Pepper/Ripe Tomato1.148061
Mature Eggplant/Ripe Tomato0.944691

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.166750.877
1-1-2/M821.043131
12-2/M820.884630.464
12-4/M820.958251
1-3/M821.594660.248
2-1-1/M820.86870.784
2-1/M820.91667
2-6/M821.461480.695
3-2/M821.12534
4-1-1/M821.293941
4-1/M821.196431
4-3-2/M821.152451
4-3/M821.09010.268
5-3/M821.107251
6-2/M821.50993
6-3/M821.073611
7-1/M820.851360.443
7-2/M821.159160.385
9-3-2/M821.31409

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.326130.277
IL2-6/WTpooled1.091630.531
IL7-5/WTpooled0.807221
IL7-3/WTpooled1.139941
IL12-4/WTpooled0.967391
IL1-4/WTpooled1.05261
WT/WTpooled0.976621

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.974231

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.003371
DC3000/delta hrp 6h0.967870.95
DC3000/delta hrp 12h0.95071
DC3000/delta hrp 24h1.003471

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.994491

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.07831
Exp 36h1.307890.693
Exp 60h1.067741

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.989431
Var 0h0.795360.332
Var 12h I row2-row10.953550.77
Var 12h NI row2-row11.130650.34
Var 36h I row2-row11.010231
Var 36h NI row2-row11.037651
Var 60h I row2-row10.780960.293
Var 60h NI row2-row10.836450.63
Time course 0hI-0hNI0.955950.634
Time course 12hI-12hNI0.953590.551
Time course 36hI-36hNI1.176160.011
Time course 60hI-60hNI1.498030.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.035850.699
transgenic ySAMdc/azygous control (breaker)1.225590.248
transgenic ySAMdc/azygous control (red)1.223240.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.211550.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.106780.307
Manapal/WT (break)1.176090.381
Manapal/WT (red)0.959240.728