Expression of 1-1-5.1.6.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89645 | 0.532 |
27DAP/17DAP | 0.87129 | 0.622 |
39DAP/27DAP | 1.18415 | 0.553 |
41DAP/39DAP | 1.01284 | 0.921 |
42DAP/41DAP | 1.1671 | 0.882 |
43DAP/42DAP | 1.08843 | 0.993 |
47DAP/43DAP | 0.8851 | 0.625 |
52DAP/47DAP | 0.91099 | 0.729 |
57DAP/52DAP | 1.09283 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98497 | 0.616 |
17DAP/reference | 0.85908 | 0.025 |
27DAP/reference | 0.87466 | 0.163 |
39DAP/reference | 0.83854 | 0.024 |
41DAP/reference | 0.688 | 0.018 |
42DAP/reference | 0.94719 | 0.182 |
43DAP/reference | 0.93479 | 0.316 |
47DAP/reference | 0.99308 | 0.602 |
52DAP/reference | 1.13045 | 0.388 |
57DAP/reference | 1.26171 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98506 | 0.763 |
27DAP/17DAP | 0.99629 | 0.969 |
39DAP/27DAP | 0.81963 | 0.054 |
41DAP/39DAP | 1.06434 | 0.887 |
42DAP/41DAP | 1.12018 | 0.354 |
43DAP/42DAP | 1.29119 | 0.23 |
47DAP/43DAP | 1.0062 | 1 |
52DAP/47DAP | 0.96752 | 0.886 |
57DAP/52DAP | 0.92523 | 0.272 |
57DAP/7DAP | 0.64716 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22195 | 0.09 |
17DAP/reference | 1.13946 | 0.896 |
27DAP/reference | 1.00293 | 0.8 |
39DAP/reference | 0.89299 | 0.146 |
41DAP/reference | 0.9149 | 0.284 |
42DAP/reference | 0.85814 | 0.031 |
43DAP/reference | 1.02866 | 0.83 |
47DAP/reference | 1.28477 | 0.026 |
52DAP/reference | 0.88827 | 0.254 |
57DAP/reference | 0.94956 | 0.341 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0283 | 1 |
17DAP/reference | 0.9361 | 0.367 |
27DAP/reference | 1.13398 | 0.2 |
39DAP/reference | 1.08826 | 0.571 |
41DAP/reference | 1.17488 | 0.043 |
42DAP/reference | 1.13212 | 0.207 |
43DAP/reference | 0.83837 | 0.17 |
47DAP/reference | 1.1328 | 0.264 |
52DAP/reference | 0.9063 | 0.171 |
57DAP/reference | 0.83749 | 0.068 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19266 | 0.347 |
17DAP/reference | 0.93052 | 0.374 |
27DAP/reference | 0.94787 | 0.286 |
39DAP/reference | 0.97272 | 0.544 |
41DAP/reference | 1.02085 | 1 |
42DAP/reference | 1.18131 | 0.333 |
43DAP/reference | 1.05437 | 0.949 |
47DAP/reference | 0.89352 | 0.224 |
52DAP/reference | 0.97823 | 0.704 |
57DAP/reference | 1.48486 | 0.007 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.15672 | 0.966 |
26DAP/20DAP | 1.39964 | 0.121 |
34DAP/26DAP | 0.84709 | 0.095 |
51DAP/34DAP | 1.29881 | 0.059 |
52DAP/51DAP | 1.00033 | 1 |
53DAP/52DAP | 1.06647 | 1 |
55DAP/53DAP | 0.68222 | 0.021 |
57DAP/55DAP | 1.30962 | 0.474 |
62DAP/57DAP | 1.23163 | |
68DAP/62DAP | 1.75433 | |
68DAP/14DAP | 2.36081 | 0.016 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.22004 | 0.172 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.24242 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.25627 | 0.478 |
Immature Eggplant/Mature Eggplant | 1.41362 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.14806 | 1 |
Mature Eggplant/Ripe Tomato | 0.94469 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.16675 | 0.877 |
1-1-2/M82 | 1.04313 | 1 |
12-2/M82 | 0.88463 | 0.464 |
12-4/M82 | 0.95825 | 1 |
1-3/M82 | 1.59466 | 0.248 |
2-1-1/M82 | 0.8687 | 0.784 |
2-1/M82 | 0.91667 | |
2-6/M82 | 1.46148 | 0.695 |
3-2/M82 | 1.12534 | |
4-1-1/M82 | 1.29394 | 1 |
4-1/M82 | 1.19643 | 1 |
4-3-2/M82 | 1.15245 | 1 |
4-3/M82 | 1.0901 | 0.268 |
5-3/M82 | 1.10725 | 1 |
6-2/M82 | 1.50993 | |
6-3/M82 | 1.07361 | 1 |
7-1/M82 | 0.85136 | 0.443 |
7-2/M82 | 1.15916 | 0.385 |
9-3-2/M82 | 1.31409 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.32613 | 0.277 |
IL2-6/WTpooled | 1.09163 | 0.531 |
IL7-5/WTpooled | 0.80722 | 1 |
IL7-3/WTpooled | 1.13994 | 1 |
IL12-4/WTpooled | 0.96739 | 1 |
IL1-4/WTpooled | 1.0526 | 1 |
WT/WTpooled | 0.97662 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97423 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00337 | 1 |
DC3000/delta hrp 6h | 0.96787 | 0.95 |
DC3000/delta hrp 12h | 0.9507 | 1 |
DC3000/delta hrp 24h | 1.00347 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.99449 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0783 | 1 |
Exp 36h | 1.30789 | 0.693 |
Exp 60h | 1.06774 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98943 | 1 |
Var 0h | 0.79536 | 0.332 |
Var 12h I row2-row1 | 0.95355 | 0.77 |
Var 12h NI row2-row1 | 1.13065 | 0.34 |
Var 36h I row2-row1 | 1.01023 | 1 |
Var 36h NI row2-row1 | 1.03765 | 1 |
Var 60h I row2-row1 | 0.78096 | 0.293 |
Var 60h NI row2-row1 | 0.83645 | 0.63 |
Time course 0hI-0hNI | 0.95595 | 0.634 |
Time course 12hI-12hNI | 0.95359 | 0.551 |
Time course 36hI-36hNI | 1.17616 | 0.011 |
Time course 60hI-60hNI | 1.49803 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03585 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 1.22559 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.22324 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.21155 | 0.115 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.10678 | 0.307 |
Manapal/WT (break) | 1.17609 | 0.381 |
Manapal/WT (red) | 0.95924 | 0.728 |
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