Expression of 1-1-5.1.8.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.104130.904
27DAP/17DAP0.82660.577
39DAP/27DAP1.586720.07
41DAP/39DAP0.821480.379
42DAP/41DAP1.000811
43DAP/42DAP1.306220.728
47DAP/43DAP0.850640.533
52DAP/47DAP1.238110.856
57DAP/52DAP0.980480.982

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.111510.179
17DAP/reference1.268380.011
27DAP/reference1.182670.029
39DAP/reference1.100760.465
41DAP/reference1.305570.013
42DAP/reference1.030591
43DAP/reference1.237
47DAP/reference0.946870.392
52DAP/reference0.818240.093
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.230620.176
27DAP/17DAP1.013280.995
39DAP/27DAP1.003620.925
41DAP/39DAP1.132210.896
42DAP/41DAP1.115070.508
43DAP/42DAP0.872340.172
47DAP/43DAP1.037470.934
52DAP/47DAP0.984080.941
57DAP/52DAP1.014820.997
57DAP/7DAP1.182330.207

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.95460.55
17DAP/reference0.991850.693
27DAP/reference1.057650.804
39DAP/reference1.010421
41DAP/reference1.129980.402
42DAP/reference1.194250.405
43DAP/reference1.197670.457
47DAP/reference1.167380.247
52DAP/reference0.946380.398
57DAP/reference0.91780.353

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.139330.177
17DAP/reference0.964170.461
27DAP/reference0.879920.317
39DAP/reference1.007310.745
41DAP/reference0.814820.06
42DAP/reference0.864580.135
43DAP/reference1.059840.515
47DAP/reference1.017770.795
52DAP/reference1.079810.322
57DAP/reference1.263380.123

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.2110.287
17DAP/reference0.957360.681
27DAP/reference0.60328
39DAP/reference0.790580.464
41DAP/reference0.886020.459
42DAP/reference0.885090.671
43DAP/reference1.567410.505
47DAP/reference0.945110.383
52DAP/reference1.377320.491
57DAP/reference4.187460.481

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.083470.966
26DAP/20DAP1.584120.099
34DAP/26DAP1.156781
51DAP/34DAP1.016860.96
52DAP/51DAP0.91341
53DAP/52DAP1.204370.712
55DAP/53DAP0.707290.02
57DAP/55DAP1.277090.826
62DAP/57DAP1.039161
68DAP/62DAP0.871790.609
68DAP/14DAP0.734870.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.330780.131

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.808960.096
Immature Eggplant/Mature Eggplant1.034970.379
Ripe Pepper/Ripe Tomato0.202590.224
Mature Eggplant/Ripe Tomato0.206610.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.00891
1-1-2/M821.128231
12-2/M820.941320.955
12-4/M821.091361
1-3/M821.626290.479
2-1-1/M820.98009
2-1/M820.782060.345
2-6/M821.037211
3-2/M821.314630.463
4-1-1/M820.872611
4-1/M820.92874
4-3-2/M821.5487
4-3/M821.06911
5-3/M820.806350.642
6-2/M821.26298
6-3/M820.778070.796
7-1/M820.893731
7-2/M821.06250.291
9-3-2/M821.41789

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.099531
IL2-6/WTpooled1.072740.788
IL7-5/WTpooled0.758111
IL7-3/WTpooled1.141591
IL12-4/WTpooled0.849670.554
IL1-4/WTpooled1.086591
WT/WTpooled0.866461

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.090341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.906071
DC3000/delta hrp 6h0.983350.95
DC3000/delta hrp 12h1.176731
DC3000/delta hrp 24h1.160860.467

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.219950.094
DC3000 delta B/DC3000 delta AB1.380990.082

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.090461
Exp 36h1.337860.693
Exp 60h1.271650.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.042791
Var 0h0.931840.933
Var 12h I row2-row11.032421
Var 12h NI row2-row11.076441
Var 36h I row2-row11.302980.908
Var 36h NI row2-row10.970180.743
Var 60h I row2-row10.870110.285
Var 60h NI row2-row10.905460.818
Time course 0hI-0hNI0.961170.795
Time course 12hI-12hNI1.139110.186
Time course 36hI-36hNI1.376330.007
Time course 60hI-60hNI1.896260.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.093541
transgenic ySAMdc/azygous control (breaker)0.493480.142
transgenic ySAMdc/azygous control (red)0.873491

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.046420.135

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.733230.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.588010.172
Manapal/WT (break)1.119220.381
Manapal/WT (red)0.828290.242