Expression of 1-1-5.1.8.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1211 | 0.838 |
27DAP/17DAP | 1.04519 | 0.964 |
39DAP/27DAP | 1.30456 | 0.548 |
41DAP/39DAP | 1.32243 | 0.286 |
42DAP/41DAP | 1.01972 | 1 |
43DAP/42DAP | 1.19878 | 0.854 |
47DAP/43DAP | 1.09634 | 0.95 |
52DAP/47DAP | 0.666 | 0.214 |
57DAP/52DAP | 1.35328 | 0.76 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9552 | 0.476 |
17DAP/reference | 0.95387 | 0.298 |
27DAP/reference | 1.00041 | 0.867 |
39DAP/reference | 1.43982 | 0.072 |
41DAP/reference | 1.1842 | 0.122 |
42DAP/reference | 1.12356 | 0.093 |
43DAP/reference | 1.8893 | 0.007 |
47DAP/reference | 1.62368 | 0.001 |
52DAP/reference | 1.18078 | 0.286 |
57DAP/reference | 1.50496 | 0.018 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13568 | 0.547 |
27DAP/17DAP | 1.0669 | 0.909 |
39DAP/27DAP | 1.14966 | 0.378 |
41DAP/39DAP | 0.74421 | 0.031 |
42DAP/41DAP | 1.35735 | 0.055 |
43DAP/42DAP | 1.61575 | 0.014 |
47DAP/43DAP | 1.25279 | 0.036 |
52DAP/47DAP | 1.03162 | 0.982 |
57DAP/52DAP | 0.91192 | 0.16 |
57DAP/7DAP | 1.27399 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21347 | 0.17 |
17DAP/reference | 1.27658 | 0.007 |
27DAP/reference | 1.77252 | 0.006 |
39DAP/reference | 1.4321 | 0.006 |
41DAP/reference | 1.67277 | 0.131 |
42DAP/reference | 2.30978 | 0.012 |
43DAP/reference | 1.79183 | 0.006 |
47DAP/reference | 2.18794 | 0.015 |
52DAP/reference | 2.03609 | 0.007 |
57DAP/reference | 1.4907 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79809 | 0.027 |
17DAP/reference | 0.81025 | 0.034 |
27DAP/reference | 0.98077 | 0.537 |
39DAP/reference | 0.91602 | 0.221 |
41DAP/reference | 0.79936 | 0.058 |
42DAP/reference | 1.12696 | 0.408 |
43DAP/reference | 0.99206 | 0.681 |
47DAP/reference | 1.13382 | 0.426 |
52DAP/reference | 0.97719 | 0.433 |
57DAP/reference | 1.27283 | 0.398 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15111 | 0.433 |
17DAP/reference | 0.95215 | 0.571 |
27DAP/reference | 1.14914 | 0.059 |
39DAP/reference | 1.37386 | 0.01 |
41DAP/reference | 1.37889 | 0.011 |
42DAP/reference | 1.37999 | 0.029 |
43DAP/reference | 1.18579 | 0.396 |
47DAP/reference | 1.08686 | 0.585 |
52DAP/reference | 1.40445 | 0.252 |
57DAP/reference | 1.15285 | 0.706 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.13556 | 0.966 |
26DAP/20DAP | 1.89306 | 0.098 |
34DAP/26DAP | 1.17207 | 0.304 |
51DAP/34DAP | 2.69406 | 0.025 |
52DAP/51DAP | 0.66082 | 0.151 |
53DAP/52DAP | 0.92992 | 0.649 |
55DAP/53DAP | 0.65378 | 0.023 |
57DAP/55DAP | 1.1817 | 0.171 |
62DAP/57DAP | 1.18786 | 0.868 |
68DAP/62DAP | 0.69634 | 0.039 |
68DAP/14DAP | 2.34362 | 0.025 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.56534 | 0.042 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.56098 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.34148 | 0.014 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.38291 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.20935 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.56355 | 1 |
1-1-2/M82 | 1.11615 | 1 |
12-2/M82 | 1.20643 | 1 |
12-4/M82 | 1.36904 | 1 |
1-3/M82 | 2.01388 | 0.248 |
2-1-1/M82 | 1.03372 | 0.403 |
2-1/M82 | 1.00335 | 1 |
2-6/M82 | 1.00814 | 1 |
3-2/M82 | 1.00041 | |
4-1-1/M82 | 1.51771 | 1 |
4-1/M82 | 0.78196 | |
4-3-2/M82 | 0.9791 | 1 |
4-3/M82 | 1.3503 | 1 |
5-3/M82 | 1.05961 | 1 |
6-2/M82 | 1.2538 | 1 |
6-3/M82 | 1.05519 | 1 |
7-1/M82 | 0.87398 | 1 |
7-2/M82 | 1.29663 | 1 |
9-3-2/M82 | 1.25891 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.99114 | |
IL2-6/WTpooled | 0.98957 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.94575 | 1 |
IL12-4/WTpooled | 1.01663 | 0.891 |
IL1-4/WTpooled | 1.16493 | 1 |
WT/WTpooled | 1.03355 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9328 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06264 | 0.921 |
DC3000/delta hrp 6h | 4.19536 | 1 |
DC3000/delta hrp 12h | 1.01632 | 1 |
DC3000/delta hrp 24h | 0.88795 | 0.136 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.77337 | 0.129 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.13778 | 0.254 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99987 | 1 |
Var 0h | 1.03067 | 1 |
Var 12h I row2-row1 | 0.9632 | 0.856 |
Var 12h NI row2-row1 | 0.62948 | 0.438 |
Var 36h I row2-row1 | 0.96112 | 0.575 |
Var 36h NI row2-row1 | 0.90875 | 1 |
Var 60h I row2-row1 | 0.67208 | 1 |
Var 60h NI row2-row1 | 0.92179 | 1 |
Time course 0hI-0hNI | 0.91695 | 0.297 |
Time course 12hI-12hNI | 0.96237 | 0.632 |
Time course 36hI-36hNI | 0.96801 | 0.514 |
Time course 60hI-60hNI | 0.39152 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92378 | 0.377 |
transgenic ySAMdc/azygous control (breaker) | 0.91432 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.92896 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.10761 | 0.083 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.13377 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.36915 | 0.14 |
Manapal/WT (break) | 0.7744 | 1 |
Manapal/WT (red) | 0.58884 | 0.181 |
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