Expression of 1-1-5.1.8.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.12110.838
27DAP/17DAP1.045190.964
39DAP/27DAP1.304560.548
41DAP/39DAP1.322430.286
42DAP/41DAP1.019721
43DAP/42DAP1.198780.854
47DAP/43DAP1.096340.95
52DAP/47DAP0.6660.214
57DAP/52DAP1.353280.76

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.95520.476
17DAP/reference0.953870.298
27DAP/reference1.000410.867
39DAP/reference1.439820.072
41DAP/reference1.18420.122
42DAP/reference1.123560.093
43DAP/reference1.88930.007
47DAP/reference1.623680.001
52DAP/reference1.180780.286
57DAP/reference1.504960.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.135680.547
27DAP/17DAP1.06690.909
39DAP/27DAP1.149660.378
41DAP/39DAP0.744210.031
42DAP/41DAP1.357350.055
43DAP/42DAP1.615750.014
47DAP/43DAP1.252790.036
52DAP/47DAP1.031620.982
57DAP/52DAP0.911920.16
57DAP/7DAP1.273990.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.213470.17
17DAP/reference1.276580.007
27DAP/reference1.772520.006
39DAP/reference1.43210.006
41DAP/reference1.672770.131
42DAP/reference2.309780.012
43DAP/reference1.791830.006
47DAP/reference2.187940.015
52DAP/reference2.036090.007
57DAP/reference1.49070.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.798090.027
17DAP/reference0.810250.034
27DAP/reference0.980770.537
39DAP/reference0.916020.221
41DAP/reference0.799360.058
42DAP/reference1.126960.408
43DAP/reference0.992060.681
47DAP/reference1.133820.426
52DAP/reference0.977190.433
57DAP/reference1.272830.398

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.151110.433
17DAP/reference0.952150.571
27DAP/reference1.149140.059
39DAP/reference1.373860.01
41DAP/reference1.378890.011
42DAP/reference1.379990.029
43DAP/reference1.185790.396
47DAP/reference1.086860.585
52DAP/reference1.404450.252
57DAP/reference1.152850.706

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.135560.966
26DAP/20DAP1.893060.098
34DAP/26DAP1.172070.304
51DAP/34DAP2.694060.025
52DAP/51DAP0.660820.151
53DAP/52DAP0.929920.649
55DAP/53DAP0.653780.023
57DAP/55DAP1.18170.171
62DAP/57DAP1.187860.868
68DAP/62DAP0.696340.039
68DAP/14DAP2.343620.025

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.565340.042

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.560980.058
Mature Green Tomato/Ripe Tomato0.341480.014
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.382910.224
Mature Eggplant/Ripe Tomato0.209350.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.563551
1-1-2/M821.116151
12-2/M821.206431
12-4/M821.369041
1-3/M822.013880.248
2-1-1/M821.033720.403
2-1/M821.003351
2-6/M821.008141
3-2/M821.00041
4-1-1/M821.517711
4-1/M820.78196
4-3-2/M820.97911
4-3/M821.35031
5-3/M821.059611
6-2/M821.25381
6-3/M821.055191
7-1/M820.873981
7-2/M821.296631
9-3-2/M821.258911

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.99114
IL2-6/WTpooled0.989571
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.945751
IL12-4/WTpooled1.016630.891
IL1-4/WTpooled1.164931
WT/WTpooled1.033551

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.93281

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.062640.921
DC3000/delta hrp 6h4.195361
DC3000/delta hrp 12h1.016321
DC3000/delta hrp 24h0.887950.136

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.773370.129

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.137780.254
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.999871
Var 0h1.030671
Var 12h I row2-row10.96320.856
Var 12h NI row2-row10.629480.438
Var 36h I row2-row10.961120.575
Var 36h NI row2-row10.908751
Var 60h I row2-row10.672081
Var 60h NI row2-row10.921791
Time course 0hI-0hNI0.916950.297
Time course 12hI-12hNI0.962370.632
Time course 36hI-36hNI0.968010.514
Time course 60hI-60hNI0.391520.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.923780.377
transgenic ySAMdc/azygous control (breaker)0.914320.49
transgenic ySAMdc/azygous control (red)0.928961

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.107610.083

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.133771

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.369150.14
Manapal/WT (break)0.77441
Manapal/WT (red)0.588840.181