Expression of 1-1-5.1.8.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.98940.689
27DAP/17DAP1.080071
39DAP/27DAP1.589530.285
41DAP/39DAP1.204510.58
42DAP/41DAP1.000691
43DAP/42DAP0.905770.813
47DAP/43DAP1.169570.361
52DAP/47DAP0.752390.385
57DAP/52DAP1.186930.958

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.817220.073
17DAP/reference0.866310.104
27DAP/reference0.838310.085
39DAP/reference1.180920.453
41DAP/reference1.110840.102
42DAP/reference1.113190.219
43DAP/reference1.212320.021
47DAP/reference1.35270.001
52DAP/reference1.262610.01
57DAP/reference1.284070.05

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.737770.103
27DAP/17DAP0.970480.821
39DAP/27DAP1.374840.117
41DAP/39DAP0.789640.398
42DAP/41DAP1.176330.334
43DAP/42DAP1.713340.017
47DAP/43DAP1.09970.396
52DAP/47DAP0.875960.575
57DAP/52DAP0.75170.113
57DAP/7DAP1.07121

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.059140.589
17DAP/reference0.817750.082
27DAP/reference0.949930.375
39DAP/reference1.281250.007
41DAP/reference1.238640.109
42DAP/reference1.406910.233
43DAP/reference1.308610.023
47DAP/reference2.060160.014
52DAP/reference1.546930.012
57DAP/reference1.058760.41

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.866190.248
17DAP/reference0.669850.019
27DAP/reference1.023440.933
39DAP/reference0.986870.586
41DAP/reference0.659630.013
42DAP/reference0.957090.433
43DAP/reference0.863050.191
47DAP/reference0.986460.527
52DAP/reference0.885650.187
57DAP/reference1.113620.523

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.916680.362
17DAP/reference0.788020.243
27DAP/reference1.257230.207
39DAP/reference0.807720.054
41DAP/reference0.886740.293
42DAP/reference1.102430.6
43DAP/reference1.189490.452
47DAP/reference0.73680.008
52DAP/reference1.233870.657
57DAP/reference0.836870.031

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.245430.966
26DAP/20DAP1.069841
34DAP/26DAP1.124651
51DAP/34DAP2.190920.064
52DAP/51DAP0.64690.079
53DAP/52DAP1.340530.697
55DAP/53DAP1.101470.782
57DAP/55DAP0.824540.38
62DAP/57DAP0.88380.466
68DAP/62DAP1.11910.323
68DAP/14DAP0.925461

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.351790.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.132660.051
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant4.031020.05
Ripe Pepper/Ripe Tomato1.080231
Mature Eggplant/Ripe Tomato0.136210.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.115481
1-1-2/M821.326031
12-2/M821.324441
12-4/M821.080991
1-3/M822.620520.248
2-1-1/M820.9150.784
2-1/M820.847910.74
2-6/M820.862060.501
3-2/M821.205470.967
4-1-1/M820.928331
4-1/M821.0471
4-3-2/M821.332110.508
4-3/M821.370991
5-3/M820.853230.642
6-2/M820.874480.444
6-3/M821.066441
7-1/M820.871630.803
7-2/M821.165921
9-3-2/M821.65521

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.141221
IL2-6/WTpooled0.947051
IL7-5/WTpooled0.696571
IL7-3/WTpooled1.059751
IL12-4/WTpooled0.833080.484
IL1-4/WTpooled1.173951
WT/WTpooled0.830441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.132451

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.931181
DC3000/delta hrp 6h0.818430.95
DC3000/delta hrp 12h0.819741
DC3000/delta hrp 24h0.897960.274

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.953380.341
DC3000 delta B/DC3000 delta AB0.94990.638

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.488851
Exp 36h1.394510.409
Exp 60h1.260360.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.969891
Var 0h1.055191
Var 12h I row2-row10.80160.357
Var 12h NI row2-row11.028471
Var 36h I row2-row11.077350.309
Var 36h NI row2-row11.147731
Var 60h I row2-row10.83760.285
Var 60h NI row2-row10.887060.932
Time course 0hI-0hNI0.979990.935
Time course 12hI-12hNI1.037160.709
Time course 36hI-36hNI1.80260.004
Time course 60hI-60hNI1.331540.115

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.815960.324
transgenic ySAMdc/azygous control (breaker)1.908970.172
transgenic ySAMdc/azygous control (red)2.200010.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.457920.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.177550.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.561780.183
Manapal/WT (red)0.911830.607