Expression of 1-1-5.1.8.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9894 | 0.689 |
27DAP/17DAP | 1.08007 | 1 |
39DAP/27DAP | 1.58953 | 0.285 |
41DAP/39DAP | 1.20451 | 0.58 |
42DAP/41DAP | 1.00069 | 1 |
43DAP/42DAP | 0.90577 | 0.813 |
47DAP/43DAP | 1.16957 | 0.361 |
52DAP/47DAP | 0.75239 | 0.385 |
57DAP/52DAP | 1.18693 | 0.958 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81722 | 0.073 |
17DAP/reference | 0.86631 | 0.104 |
27DAP/reference | 0.83831 | 0.085 |
39DAP/reference | 1.18092 | 0.453 |
41DAP/reference | 1.11084 | 0.102 |
42DAP/reference | 1.11319 | 0.219 |
43DAP/reference | 1.21232 | 0.021 |
47DAP/reference | 1.3527 | 0.001 |
52DAP/reference | 1.26261 | 0.01 |
57DAP/reference | 1.28407 | 0.05 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.73777 | 0.103 |
27DAP/17DAP | 0.97048 | 0.821 |
39DAP/27DAP | 1.37484 | 0.117 |
41DAP/39DAP | 0.78964 | 0.398 |
42DAP/41DAP | 1.17633 | 0.334 |
43DAP/42DAP | 1.71334 | 0.017 |
47DAP/43DAP | 1.0997 | 0.396 |
52DAP/47DAP | 0.87596 | 0.575 |
57DAP/52DAP | 0.7517 | 0.113 |
57DAP/7DAP | 1.0712 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05914 | 0.589 |
17DAP/reference | 0.81775 | 0.082 |
27DAP/reference | 0.94993 | 0.375 |
39DAP/reference | 1.28125 | 0.007 |
41DAP/reference | 1.23864 | 0.109 |
42DAP/reference | 1.40691 | 0.233 |
43DAP/reference | 1.30861 | 0.023 |
47DAP/reference | 2.06016 | 0.014 |
52DAP/reference | 1.54693 | 0.012 |
57DAP/reference | 1.05876 | 0.41 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86619 | 0.248 |
17DAP/reference | 0.66985 | 0.019 |
27DAP/reference | 1.02344 | 0.933 |
39DAP/reference | 0.98687 | 0.586 |
41DAP/reference | 0.65963 | 0.013 |
42DAP/reference | 0.95709 | 0.433 |
43DAP/reference | 0.86305 | 0.191 |
47DAP/reference | 0.98646 | 0.527 |
52DAP/reference | 0.88565 | 0.187 |
57DAP/reference | 1.11362 | 0.523 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91668 | 0.362 |
17DAP/reference | 0.78802 | 0.243 |
27DAP/reference | 1.25723 | 0.207 |
39DAP/reference | 0.80772 | 0.054 |
41DAP/reference | 0.88674 | 0.293 |
42DAP/reference | 1.10243 | 0.6 |
43DAP/reference | 1.18949 | 0.452 |
47DAP/reference | 0.7368 | 0.008 |
52DAP/reference | 1.23387 | 0.657 |
57DAP/reference | 0.83687 | 0.031 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.24543 | 0.966 |
26DAP/20DAP | 1.06984 | 1 |
34DAP/26DAP | 1.12465 | 1 |
51DAP/34DAP | 2.19092 | 0.064 |
52DAP/51DAP | 0.6469 | 0.079 |
53DAP/52DAP | 1.34053 | 0.697 |
55DAP/53DAP | 1.10147 | 0.782 |
57DAP/55DAP | 0.82454 | 0.38 |
62DAP/57DAP | 0.8838 | 0.466 |
68DAP/62DAP | 1.1191 | 0.323 |
68DAP/14DAP | 0.92546 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.35179 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.13266 | 0.051 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 4.03102 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.08023 | 1 |
Mature Eggplant/Ripe Tomato | 0.13621 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11548 | 1 |
1-1-2/M82 | 1.32603 | 1 |
12-2/M82 | 1.32444 | 1 |
12-4/M82 | 1.08099 | 1 |
1-3/M82 | 2.62052 | 0.248 |
2-1-1/M82 | 0.915 | 0.784 |
2-1/M82 | 0.84791 | 0.74 |
2-6/M82 | 0.86206 | 0.501 |
3-2/M82 | 1.20547 | 0.967 |
4-1-1/M82 | 0.92833 | 1 |
4-1/M82 | 1.047 | 1 |
4-3-2/M82 | 1.33211 | 0.508 |
4-3/M82 | 1.37099 | 1 |
5-3/M82 | 0.85323 | 0.642 |
6-2/M82 | 0.87448 | 0.444 |
6-3/M82 | 1.06644 | 1 |
7-1/M82 | 0.87163 | 0.803 |
7-2/M82 | 1.16592 | 1 |
9-3-2/M82 | 1.6552 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.14122 | 1 |
IL2-6/WTpooled | 0.94705 | 1 |
IL7-5/WTpooled | 0.69657 | 1 |
IL7-3/WTpooled | 1.05975 | 1 |
IL12-4/WTpooled | 0.83308 | 0.484 |
IL1-4/WTpooled | 1.17395 | 1 |
WT/WTpooled | 0.83044 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.13245 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93118 | 1 |
DC3000/delta hrp 6h | 0.81843 | 0.95 |
DC3000/delta hrp 12h | 0.81974 | 1 |
DC3000/delta hrp 24h | 0.89796 | 0.274 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.95338 | 0.341 |
DC3000 delta B/DC3000 delta AB | 0.9499 | 0.638 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.48885 | 1 |
Exp 36h | 1.39451 | 0.409 |
Exp 60h | 1.26036 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96989 | 1 |
Var 0h | 1.05519 | 1 |
Var 12h I row2-row1 | 0.8016 | 0.357 |
Var 12h NI row2-row1 | 1.02847 | 1 |
Var 36h I row2-row1 | 1.07735 | 0.309 |
Var 36h NI row2-row1 | 1.14773 | 1 |
Var 60h I row2-row1 | 0.8376 | 0.285 |
Var 60h NI row2-row1 | 0.88706 | 0.932 |
Time course 0hI-0hNI | 0.97999 | 0.935 |
Time course 12hI-12hNI | 1.03716 | 0.709 |
Time course 36hI-36hNI | 1.8026 | 0.004 |
Time course 60hI-60hNI | 1.33154 | 0.115 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.81596 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 1.90897 | 0.172 |
transgenic ySAMdc/azygous control (red) | 2.20001 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.45792 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.17755 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.56178 | 0.183 |
Manapal/WT (red) | 0.91183 | 0.607 |
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