Expression of 1-1-5.1.8.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19258 | 0.755 |
27DAP/17DAP | 0.76302 | 0.273 |
39DAP/27DAP | 0.99833 | 0.876 |
41DAP/39DAP | 1.07729 | 0.833 |
42DAP/41DAP | 0.97447 | 1 |
43DAP/42DAP | 0.81714 | 0.712 |
47DAP/43DAP | 1.059 | 0.52 |
52DAP/47DAP | 0.86382 | 0.622 |
57DAP/52DAP | 1.1782 | 0.784 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21174 | 0.188 |
17DAP/reference | 1.43157 | 0.018 |
27DAP/reference | 1.05643 | 0.721 |
39DAP/reference | 0.9968 | 0.885 |
41DAP/reference | 1.1707 | 0.038 |
42DAP/reference | 1.07781 | 0.504 |
43DAP/reference | 1.09586 | 0.233 |
47DAP/reference | 0.93804 | 0.242 |
52DAP/reference | 0.79422 | 0.033 |
57DAP/reference | 0.84012 | 0.031 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0066 | 0.847 |
27DAP/17DAP | 0.9681 | 0.854 |
39DAP/27DAP | 0.83405 | 0.103 |
41DAP/39DAP | 1.10631 | 0.623 |
42DAP/41DAP | 0.94561 | 0.654 |
43DAP/42DAP | 0.90426 | 0.431 |
47DAP/43DAP | 1.01108 | 0.934 |
52DAP/47DAP | 1.06939 | 0.915 |
57DAP/52DAP | 1.19121 | 0.262 |
57DAP/7DAP | 1.08509 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93403 | 0.361 |
17DAP/reference | 1.04494 | 0.971 |
27DAP/reference | 0.98493 | 0.53 |
39DAP/reference | 0.97136 | 0.474 |
41DAP/reference | 0.95707 | 0.375 |
42DAP/reference | 0.99472 | 0.554 |
43DAP/reference | 1.10379 | 0.325 |
47DAP/reference | 1.1312 | 0.413 |
52DAP/reference | 0.9143 | 0.213 |
57DAP/reference | 0.86882 | 0.128 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09617 | 0.177 |
17DAP/reference | 1.12019 | 0.674 |
27DAP/reference | 0.88142 | 0.079 |
39DAP/reference | 1.12591 | 0.309 |
41DAP/reference | 0.94969 | 0.322 |
42DAP/reference | 1.10801 | 0.294 |
43DAP/reference | 1.36939 | 0.063 |
47DAP/reference | 1.03758 | 0.603 |
52DAP/reference | 0.90992 | 0.171 |
57DAP/reference | 0.96665 | 0.488 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91528 | 0.268 |
17DAP/reference | 1.04229 | 0.934 |
27DAP/reference | 0.88588 | 0.302 |
39DAP/reference | 0.87459 | 0.031 |
41DAP/reference | 0.94878 | 0.459 |
42DAP/reference | 1.02731 | 0.893 |
43DAP/reference | 0.83667 | 0.059 |
47DAP/reference | 0.83241 | 0.016 |
52DAP/reference | 0.86813 | 0.296 |
57DAP/reference | 0.86405 | 0.167 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09938 | 0.966 |
26DAP/20DAP | 1.37361 | 0.243 |
34DAP/26DAP | 1.34017 | 0.154 |
51DAP/34DAP | 0.85702 | 0.504 |
52DAP/51DAP | 10.7822 | 0.616 |
53DAP/52DAP | 1.19202 | 0.909 |
55DAP/53DAP | 2.40442 | 0.869 |
57DAP/55DAP | 1.09435 | 1 |
62DAP/57DAP | 0.94788 | 0.994 |
68DAP/62DAP | 1.01265 | 1 |
68DAP/14DAP | 1.07298 | 0.762 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.27986 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.63198 | 0.267 |
Immature Eggplant/Mature Eggplant | 3.03371 | 0.051 |
Ripe Pepper/Ripe Tomato | 0.44208 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.33515 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0099 | 1 |
1-1-2/M82 | 0.99654 | 1 |
12-2/M82 | 1.04155 | 1 |
12-4/M82 | 1.09394 | 1 |
1-3/M82 | 1.23922 | 0.255 |
2-1-1/M82 | 1.02716 | 1 |
2-1/M82 | 1.14792 | 1 |
2-6/M82 | 0.96668 | 1 |
3-2/M82 | 0.90748 | |
4-1-1/M82 | 0.96506 | 1 |
4-1/M82 | 0.95336 | 1 |
4-3-2/M82 | 0.99874 | |
4-3/M82 | 1.04528 | 1 |
5-3/M82 | 0.98822 | 1 |
6-2/M82 | 0.79233 | |
6-3/M82 | 1.04862 | 1 |
7-1/M82 | 1.01964 | 1 |
7-2/M82 | 0.91729 | 0.881 |
9-3-2/M82 | 1.02768 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83891 | 0.321 |
IL2-6/WTpooled | 1.21902 | 0.584 |
IL7-5/WTpooled | 0.83306 | 1 |
IL7-3/WTpooled | 1.09943 | 1 |
IL12-4/WTpooled | 0.87026 | 0.581 |
IL1-4/WTpooled | 1.0522 | 1 |
WT/WTpooled | 0.92651 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.00359 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02001 | 0.921 |
DC3000/delta hrp 6h | 0.4722 | |
DC3000/delta hrp 12h | 1.05548 | 1 |
DC3000/delta hrp 24h | 1.082 | 0.535 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.32669 | |
DC3000 delta B/DC3000 delta AB | 0.91816 | 0.558 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.6155 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97444 | 1 |
Var 0h | 1.07359 | 0.98 |
Var 12h I row2-row1 | 1.01562 | 1 |
Var 12h NI row2-row1 | 1.21537 | 1 |
Var 36h I row2-row1 | 1.10982 | 0.298 |
Var 36h NI row2-row1 | 0.85604 | 0.584 |
Var 60h I row2-row1 | 1.05715 | 0.562 |
Var 60h NI row2-row1 | 1.0059 | 1 |
Time course 0hI-0hNI | 0.96299 | 0.827 |
Time course 12hI-12hNI | 0.98159 | 0.87 |
Time course 36hI-36hNI | 1.0813 | 0.355 |
Time course 60hI-60hNI | 0.69345 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.19631 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 0.79469 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.98311 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96841 | 0.459 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.70816 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.77311 | 1 |
Manapal/WT (break) | 0.98879 | 1 |
Manapal/WT (red) | 0.98003 | 0.863 |
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