Expression of 1-1-5.1.8.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.192580.755
27DAP/17DAP0.763020.273
39DAP/27DAP0.998330.876
41DAP/39DAP1.077290.833
42DAP/41DAP0.974471
43DAP/42DAP0.817140.712
47DAP/43DAP1.0590.52
52DAP/47DAP0.863820.622
57DAP/52DAP1.17820.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.211740.188
17DAP/reference1.431570.018
27DAP/reference1.056430.721
39DAP/reference0.99680.885
41DAP/reference1.17070.038
42DAP/reference1.077810.504
43DAP/reference1.095860.233
47DAP/reference0.938040.242
52DAP/reference0.794220.033
57DAP/reference0.840120.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.00660.847
27DAP/17DAP0.96810.854
39DAP/27DAP0.834050.103
41DAP/39DAP1.106310.623
42DAP/41DAP0.945610.654
43DAP/42DAP0.904260.431
47DAP/43DAP1.011080.934
52DAP/47DAP1.069390.915
57DAP/52DAP1.191210.262
57DAP/7DAP1.085091

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.934030.361
17DAP/reference1.044940.971
27DAP/reference0.984930.53
39DAP/reference0.971360.474
41DAP/reference0.957070.375
42DAP/reference0.994720.554
43DAP/reference1.103790.325
47DAP/reference1.13120.413
52DAP/reference0.91430.213
57DAP/reference0.868820.128

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.096170.177
17DAP/reference1.120190.674
27DAP/reference0.881420.079
39DAP/reference1.125910.309
41DAP/reference0.949690.322
42DAP/reference1.108010.294
43DAP/reference1.369390.063
47DAP/reference1.037580.603
52DAP/reference0.909920.171
57DAP/reference0.966650.488

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.915280.268
17DAP/reference1.042290.934
27DAP/reference0.885880.302
39DAP/reference0.874590.031
41DAP/reference0.948780.459
42DAP/reference1.027310.893
43DAP/reference0.836670.059
47DAP/reference0.832410.016
52DAP/reference0.868130.296
57DAP/reference0.864050.167

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.099380.966
26DAP/20DAP1.373610.243
34DAP/26DAP1.340170.154
51DAP/34DAP0.857020.504
52DAP/51DAP10.78220.616
53DAP/52DAP1.192020.909
55DAP/53DAP2.404420.869
57DAP/55DAP1.094351
62DAP/57DAP0.947880.994
68DAP/62DAP1.012651
68DAP/14DAP1.072980.762

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.279860.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.631980.267
Immature Eggplant/Mature Eggplant3.033710.051
Ripe Pepper/Ripe Tomato0.442080.224
Mature Eggplant/Ripe Tomato0.335151

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.00991
1-1-2/M820.996541
12-2/M821.041551
12-4/M821.093941
1-3/M821.239220.255
2-1-1/M821.027161
2-1/M821.147921
2-6/M820.966681
3-2/M820.90748
4-1-1/M820.965061
4-1/M820.953361
4-3-2/M820.99874
4-3/M821.045281
5-3/M820.988221
6-2/M820.79233
6-3/M821.048621
7-1/M821.019641
7-2/M820.917290.881
9-3-2/M821.027681

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.838910.321
IL2-6/WTpooled1.219020.584
IL7-5/WTpooled0.833061
IL7-3/WTpooled1.099431
IL12-4/WTpooled0.870260.581
IL1-4/WTpooled1.05221
WT/WTpooled0.926511

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.003591

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.020010.921
DC3000/delta hrp 6h0.4722
DC3000/delta hrp 12h1.055481
DC3000/delta hrp 24h1.0820.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.32669
DC3000 delta B/DC3000 delta AB0.918160.558

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.61550.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.974441
Var 0h1.073590.98
Var 12h I row2-row11.015621
Var 12h NI row2-row11.215371
Var 36h I row2-row11.109820.298
Var 36h NI row2-row10.856040.584
Var 60h I row2-row11.057150.562
Var 60h NI row2-row11.00591
Time course 0hI-0hNI0.962990.827
Time course 12hI-12hNI0.981590.87
Time course 36hI-36hNI1.08130.355
Time course 60hI-60hNI0.693450.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.196310.246
transgenic ySAMdc/azygous control (breaker)0.794690.173
transgenic ySAMdc/azygous control (red)0.983111

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.968410.459

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.708160.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.773111
Manapal/WT (break)0.988791
Manapal/WT (red)0.980030.863