Expression of 1-1-5.1.8.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.15140.512
27DAP/17DAP1.053080.88
39DAP/27DAP1.374950.449
41DAP/39DAP0.888860.506
42DAP/41DAP1.044320.949
43DAP/42DAP0.946290.863
47DAP/43DAP1.069930.965
52DAP/47DAP1.145810.883
57DAP/52DAP0.981340.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.029870.567
17DAP/reference0.979790.63
27DAP/reference1.027510.587
39DAP/reference0.958950.527
41DAP/reference1.029960.587
42DAP/reference1.075770.013
43DAP/reference1.016120.812
47DAP/reference1.030470.199
52DAP/reference1.024670.991
57DAP/reference1.015660.643

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.189940.074
27DAP/17DAP1.119620.671
39DAP/27DAP0.998951
41DAP/39DAP1.179740.565
42DAP/41DAP0.932520.481
43DAP/42DAP0.932370.097
47DAP/43DAP1.039110.772
52DAP/47DAP1.020620.945
57DAP/52DAP0.967240.626
57DAP/7DAP0.954171

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.16580.173
17DAP/reference1.019421
27DAP/reference0.930460.185
39DAP/reference1.295370.008
41DAP/reference1.170570.026
42DAP/reference1.032080.686
43DAP/reference1.119710.083
47DAP/reference1.206830.047
52DAP/reference1.051110.401
57DAP/reference1.335770.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.028810.495
17DAP/reference1.092230.028
27DAP/reference1.1050.249
39DAP/reference1.128440.047
41DAP/reference1.12920.029
42DAP/reference1.115930.18
43DAP/reference1.178230.109
47DAP/reference1.045210.247
52DAP/reference1.041420.061
57DAP/reference1.023690.462

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.080930.212
17DAP/reference1.050640.675
27DAP/reference0.879980.195
39DAP/reference0.946810.246
41DAP/reference0.984790.682
42DAP/reference0.899140.22
43DAP/reference0.968020.523
47DAP/reference1.014430.901
52DAP/reference0.907150.424
57DAP/reference0.998230.858

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.008820.966
26DAP/20DAP0.877260.512
34DAP/26DAP1.037421
51DAP/34DAP0.902840.268
52DAP/51DAP0.994511
53DAP/52DAP1.125510.594
55DAP/53DAP1.004371
57DAP/55DAP1.054250.997
62DAP/57DAP0.899350.681
68DAP/62DAP1.012071
68DAP/14DAP1.021910.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.351930.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.002030.058
Mature Green Tomato/Ripe Tomato1.489810.185
Immature Eggplant/Mature Eggplant1.066440.462
Ripe Pepper/Ripe Tomato0.494670.224
Mature Eggplant/Ripe Tomato0.815890.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.01781
1-1-2/M821.10241
12-2/M820.943240.955
12-4/M821.033861
1-3/M821.097520.277
2-1-1/M821.033760.764
2-1/M820.930710.74
2-6/M820.955731
3-2/M821.008291
4-1-1/M821.145331
4-1/M821.00798
4-3-2/M821.065831
4-3/M820.903810.72
5-3/M821.044931
6-2/M821.023951
6-3/M821.018421
7-1/M821.058121
7-2/M821.013361
9-3-2/M821.090311

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.913250.243
IL2-6/WTpooled1.347830.46
IL7-5/WTpooled0.74510.559
IL7-3/WTpooled0.839140.418
IL12-4/WTpooled1.017941
IL1-4/WTpooled0.908420.444
WT/WTpooled0.950651

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.967691

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.102080.921
DC3000/delta hrp 6h1.036171
DC3000/delta hrp 12h1.056131
DC3000/delta hrp 24h1.007860.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.955111
DC3000 delta B/DC3000 delta AB0.908250.236

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.155081
Exp 36h1.251691
Exp 60h1.036351

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.005371
Var 0h0.905330.936
Var 12h I row2-row10.861210.514
Var 12h NI row2-row11.07751
Var 36h I row2-row10.888671
Var 36h NI row2-row10.837970.584
Var 60h I row2-row10.8960.832
Var 60h NI row2-row11.091410.904
Time course 0hI-0hNI1.004611
Time course 12hI-12hNI0.986080.914
Time course 36hI-36hNI0.981930.569
Time course 60hI-60hNI0.874740.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.971470.529
transgenic ySAMdc/azygous control (breaker)0.781390.137
transgenic ySAMdc/azygous control (red)0.908471

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.060160.148

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.870860.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.03331
Manapal/WT (break)0.893241
Manapal/WT (red)1.195760.222