Expression of 1-1-5.1.8.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1514 | 0.512 |
27DAP/17DAP | 1.05308 | 0.88 |
39DAP/27DAP | 1.37495 | 0.449 |
41DAP/39DAP | 0.88886 | 0.506 |
42DAP/41DAP | 1.04432 | 0.949 |
43DAP/42DAP | 0.94629 | 0.863 |
47DAP/43DAP | 1.06993 | 0.965 |
52DAP/47DAP | 1.14581 | 0.883 |
57DAP/52DAP | 0.98134 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02987 | 0.567 |
17DAP/reference | 0.97979 | 0.63 |
27DAP/reference | 1.02751 | 0.587 |
39DAP/reference | 0.95895 | 0.527 |
41DAP/reference | 1.02996 | 0.587 |
42DAP/reference | 1.07577 | 0.013 |
43DAP/reference | 1.01612 | 0.812 |
47DAP/reference | 1.03047 | 0.199 |
52DAP/reference | 1.02467 | 0.991 |
57DAP/reference | 1.01566 | 0.643 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18994 | 0.074 |
27DAP/17DAP | 1.11962 | 0.671 |
39DAP/27DAP | 0.99895 | 1 |
41DAP/39DAP | 1.17974 | 0.565 |
42DAP/41DAP | 0.93252 | 0.481 |
43DAP/42DAP | 0.93237 | 0.097 |
47DAP/43DAP | 1.03911 | 0.772 |
52DAP/47DAP | 1.02062 | 0.945 |
57DAP/52DAP | 0.96724 | 0.626 |
57DAP/7DAP | 0.95417 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1658 | 0.173 |
17DAP/reference | 1.01942 | 1 |
27DAP/reference | 0.93046 | 0.185 |
39DAP/reference | 1.29537 | 0.008 |
41DAP/reference | 1.17057 | 0.026 |
42DAP/reference | 1.03208 | 0.686 |
43DAP/reference | 1.11971 | 0.083 |
47DAP/reference | 1.20683 | 0.047 |
52DAP/reference | 1.05111 | 0.401 |
57DAP/reference | 1.33577 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02881 | 0.495 |
17DAP/reference | 1.09223 | 0.028 |
27DAP/reference | 1.105 | 0.249 |
39DAP/reference | 1.12844 | 0.047 |
41DAP/reference | 1.1292 | 0.029 |
42DAP/reference | 1.11593 | 0.18 |
43DAP/reference | 1.17823 | 0.109 |
47DAP/reference | 1.04521 | 0.247 |
52DAP/reference | 1.04142 | 0.061 |
57DAP/reference | 1.02369 | 0.462 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08093 | 0.212 |
17DAP/reference | 1.05064 | 0.675 |
27DAP/reference | 0.87998 | 0.195 |
39DAP/reference | 0.94681 | 0.246 |
41DAP/reference | 0.98479 | 0.682 |
42DAP/reference | 0.89914 | 0.22 |
43DAP/reference | 0.96802 | 0.523 |
47DAP/reference | 1.01443 | 0.901 |
52DAP/reference | 0.90715 | 0.424 |
57DAP/reference | 0.99823 | 0.858 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00882 | 0.966 |
26DAP/20DAP | 0.87726 | 0.512 |
34DAP/26DAP | 1.03742 | 1 |
51DAP/34DAP | 0.90284 | 0.268 |
52DAP/51DAP | 0.99451 | 1 |
53DAP/52DAP | 1.12551 | 0.594 |
55DAP/53DAP | 1.00437 | 1 |
57DAP/55DAP | 1.05425 | 0.997 |
62DAP/57DAP | 0.89935 | 0.681 |
68DAP/62DAP | 1.01207 | 1 |
68DAP/14DAP | 1.02191 | 0.889 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.35193 | 0.015 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.00203 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.48981 | 0.185 |
Immature Eggplant/Mature Eggplant | 1.06644 | 0.462 |
Ripe Pepper/Ripe Tomato | 0.49467 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.81589 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0178 | 1 |
1-1-2/M82 | 1.1024 | 1 |
12-2/M82 | 0.94324 | 0.955 |
12-4/M82 | 1.03386 | 1 |
1-3/M82 | 1.09752 | 0.277 |
2-1-1/M82 | 1.03376 | 0.764 |
2-1/M82 | 0.93071 | 0.74 |
2-6/M82 | 0.95573 | 1 |
3-2/M82 | 1.00829 | 1 |
4-1-1/M82 | 1.14533 | 1 |
4-1/M82 | 1.00798 | |
4-3-2/M82 | 1.06583 | 1 |
4-3/M82 | 0.90381 | 0.72 |
5-3/M82 | 1.04493 | 1 |
6-2/M82 | 1.02395 | 1 |
6-3/M82 | 1.01842 | 1 |
7-1/M82 | 1.05812 | 1 |
7-2/M82 | 1.01336 | 1 |
9-3-2/M82 | 1.09031 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.91325 | 0.243 |
IL2-6/WTpooled | 1.34783 | 0.46 |
IL7-5/WTpooled | 0.7451 | 0.559 |
IL7-3/WTpooled | 0.83914 | 0.418 |
IL12-4/WTpooled | 1.01794 | 1 |
IL1-4/WTpooled | 0.90842 | 0.444 |
WT/WTpooled | 0.95065 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96769 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10208 | 0.921 |
DC3000/delta hrp 6h | 1.03617 | 1 |
DC3000/delta hrp 12h | 1.05613 | 1 |
DC3000/delta hrp 24h | 1.00786 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.95511 | 1 |
DC3000 delta B/DC3000 delta AB | 0.90825 | 0.236 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15508 | 1 |
Exp 36h | 1.25169 | 1 |
Exp 60h | 1.03635 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00537 | 1 |
Var 0h | 0.90533 | 0.936 |
Var 12h I row2-row1 | 0.86121 | 0.514 |
Var 12h NI row2-row1 | 1.0775 | 1 |
Var 36h I row2-row1 | 0.88867 | 1 |
Var 36h NI row2-row1 | 0.83797 | 0.584 |
Var 60h I row2-row1 | 0.896 | 0.832 |
Var 60h NI row2-row1 | 1.09141 | 0.904 |
Time course 0hI-0hNI | 1.00461 | 1 |
Time course 12hI-12hNI | 0.98608 | 0.914 |
Time course 36hI-36hNI | 0.98193 | 0.569 |
Time course 60hI-60hNI | 0.87474 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97147 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 0.78139 | 0.137 |
transgenic ySAMdc/azygous control (red) | 0.90847 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06016 | 0.148 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87086 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0333 | 1 |
Manapal/WT (break) | 0.89324 | 1 |
Manapal/WT (red) | 1.19576 | 0.222 |
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