Expression of 1-1-5.1.9.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09911 | 0.77 |
27DAP/17DAP | 0.87133 | 0.677 |
39DAP/27DAP | 1.09217 | 0.888 |
41DAP/39DAP | 0.96326 | 0.857 |
42DAP/41DAP | 1.62478 | 0.802 |
43DAP/42DAP | 1.45044 | 0.636 |
47DAP/43DAP | 0.43481 | 0.049 |
52DAP/47DAP | 0.86995 | 0.705 |
57DAP/52DAP | 1.02755 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98228 | 0.589 |
17DAP/reference | 0.96646 | 0.597 |
27DAP/reference | 0.93248 | 0.215 |
39DAP/reference | 1.07809 | 0.434 |
41DAP/reference | 1.03667 | 0.552 |
42DAP/reference | 1.54494 | 0.001 |
43DAP/reference | 1.28096 | 0.009 |
47DAP/reference | 1.18696 | 0.005 |
52DAP/reference | 0.8669 | 0.073 |
57DAP/reference | 0.99201 | 0.639 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21581 | 0.069 |
27DAP/17DAP | 1.02856 | 0.945 |
39DAP/27DAP | 0.9858 | 0.943 |
41DAP/39DAP | 1.02389 | 1 |
42DAP/41DAP | 1.21584 | 0.663 |
43DAP/42DAP | 1.10444 | 0.23 |
47DAP/43DAP | 0.98339 | 0.928 |
52DAP/47DAP | 0.92262 | 0.729 |
57DAP/52DAP | 0.93381 | 0.467 |
57DAP/7DAP | 1.06148 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89384 | 0.246 |
17DAP/reference | 0.91351 | 0.22 |
27DAP/reference | 1.17323 | 0.453 |
39DAP/reference | 1.05638 | 0.705 |
41DAP/reference | 1.19628 | 0.021 |
42DAP/reference | 0.94717 | 0.262 |
43DAP/reference | 1.14468 | 0.188 |
47DAP/reference | 2.38488 | 0.057 |
52DAP/reference | 0.96237 | 0.435 |
57DAP/reference | 1.02743 | 0.804 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0223 | 0.933 |
17DAP/reference | 1.47977 | 0.031 |
27DAP/reference | 1.20609 | 0.192 |
39DAP/reference | 1.12884 | 0.436 |
41DAP/reference | 1.14805 | 0.525 |
42DAP/reference | 1.05298 | 0.519 |
43DAP/reference | 1.30208 | 0.411 |
47DAP/reference | 1.07894 | 0.264 |
52DAP/reference | 1.01775 | 1 |
57DAP/reference | 1.04282 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.956 | 0.311 |
17DAP/reference | 1.1936 | 0.209 |
27DAP/reference | 0.91881 | 0.27 |
39DAP/reference | 0.85862 | 0.023 |
41DAP/reference | 1.07503 | 0.411 |
42DAP/reference | 1.17581 | 0.424 |
43DAP/reference | 1.17215 | 0.28 |
47DAP/reference | 1.22362 | 0.12 |
52DAP/reference | 0.96215 | 0.611 |
57DAP/reference | 1.24776 | 0.135 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98736 | 1 |
26DAP/20DAP | 1.02195 | 1 |
34DAP/26DAP | 1.00854 | 1 |
51DAP/34DAP | 1.00924 | 0.936 |
52DAP/51DAP | 0.95703 | 1 |
53DAP/52DAP | 0.99189 | 0.99 |
55DAP/53DAP | 0.93809 | 0.462 |
57DAP/55DAP | 1.1443 | 0.898 |
62DAP/57DAP | 1.15107 | 0.622 |
68DAP/62DAP | 0.94426 | 0.722 |
68DAP/14DAP | 0.86711 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.69307 | 0.017 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 3.06117 | 0.058 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.5115 | 0.063 |
Ripe Pepper/Ripe Tomato | 0.22406 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.49103 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92958 | 0.944 |
1-1-2/M82 | 1.11203 | 1 |
12-2/M82 | 0.90457 | 0.955 |
12-4/M82 | 1.00082 | 1 |
1-3/M82 | 1.15762 | 0.479 |
2-1-1/M82 | 1.19037 | 0.457 |
2-1/M82 | 0.68293 | 0.74 |
2-6/M82 | 1.11308 | 0.452 |
3-2/M82 | 0.88321 | |
4-1-1/M82 | 1.43116 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.40392 | 1 |
5-3/M82 | 0.97526 | 1 |
6-2/M82 | 1.31327 | 1 |
6-3/M82 | 0.97236 | 1 |
7-1/M82 | 1.00486 | |
7-2/M82 | 1.10785 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.00638 | |
IL2-6/WTpooled | 0.921 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.92346 | 0.418 |
IL12-4/WTpooled | 0.90541 | 0.581 |
IL1-4/WTpooled | 0.93271 | 0.476 |
WT/WTpooled | 1.06782 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02204 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.936 | 1 |
DC3000/delta hrp 6h | 0.88529 | 0.95 |
DC3000/delta hrp 12h | 1.02069 | 1 |
DC3000/delta hrp 24h | 0.92497 | 0.543 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.91121 | 0.124 |
DC3000 delta B/DC3000 delta AB | 1.01003 | 0.748 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.76764 | 1 |
Exp 36h | 1.74143 | 1 |
Exp 60h | 1.0075 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01689 | 1 |
Var 0h | 1.1296 | 0.98 |
Var 12h I row2-row1 | 1.08901 | 0.58 |
Var 12h NI row2-row1 | 1.11813 | 0.281 |
Var 36h I row2-row1 | 0.99293 | 1 |
Var 36h NI row2-row1 | 1.1546 | 1 |
Var 60h I row2-row1 | 1.16391 | 0.562 |
Var 60h NI row2-row1 | 1.1206 | 0.904 |
Time course 0hI-0hNI | 1.20203 | 0.182 |
Time course 12hI-12hNI | 0.93988 | 0.324 |
Time course 36hI-36hNI | 0.70006 | 0.023 |
Time course 60hI-60hNI | 0.62099 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07381 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 0.82305 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.88683 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02546 | 0.287 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.7826 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.9423 | 1 |
Manapal/WT (break) | 1.02694 | 1 |
Manapal/WT (red) | 1.03513 | 1 |
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