Expression of 1-1-5.1.9.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.099110.77
27DAP/17DAP0.871330.677
39DAP/27DAP1.092170.888
41DAP/39DAP0.963260.857
42DAP/41DAP1.624780.802
43DAP/42DAP1.450440.636
47DAP/43DAP0.434810.049
52DAP/47DAP0.869950.705
57DAP/52DAP1.027550.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.982280.589
17DAP/reference0.966460.597
27DAP/reference0.932480.215
39DAP/reference1.078090.434
41DAP/reference1.036670.552
42DAP/reference1.544940.001
43DAP/reference1.280960.009
47DAP/reference1.186960.005
52DAP/reference0.86690.073
57DAP/reference0.992010.639

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.215810.069
27DAP/17DAP1.028560.945
39DAP/27DAP0.98580.943
41DAP/39DAP1.023891
42DAP/41DAP1.215840.663
43DAP/42DAP1.104440.23
47DAP/43DAP0.983390.928
52DAP/47DAP0.922620.729
57DAP/52DAP0.933810.467
57DAP/7DAP1.061480.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.893840.246
17DAP/reference0.913510.22
27DAP/reference1.173230.453
39DAP/reference1.056380.705
41DAP/reference1.196280.021
42DAP/reference0.947170.262
43DAP/reference1.144680.188
47DAP/reference2.384880.057
52DAP/reference0.962370.435
57DAP/reference1.027430.804

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.02230.933
17DAP/reference1.479770.031
27DAP/reference1.206090.192
39DAP/reference1.128840.436
41DAP/reference1.148050.525
42DAP/reference1.052980.519
43DAP/reference1.302080.411
47DAP/reference1.078940.264
52DAP/reference1.017751
57DAP/reference1.042821

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.9560.311
17DAP/reference1.19360.209
27DAP/reference0.918810.27
39DAP/reference0.858620.023
41DAP/reference1.075030.411
42DAP/reference1.175810.424
43DAP/reference1.172150.28
47DAP/reference1.223620.12
52DAP/reference0.962150.611
57DAP/reference1.247760.135

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.987361
26DAP/20DAP1.021951
34DAP/26DAP1.008541
51DAP/34DAP1.009240.936
52DAP/51DAP0.957031
53DAP/52DAP0.991890.99
55DAP/53DAP0.938090.462
57DAP/55DAP1.14430.898
62DAP/57DAP1.151070.622
68DAP/62DAP0.944260.722
68DAP/14DAP0.867110.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.693070.017

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.061170.058
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.51150.063
Ripe Pepper/Ripe Tomato0.224060.224
Mature Eggplant/Ripe Tomato0.491030.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.929580.944
1-1-2/M821.112031
12-2/M820.904570.955
12-4/M821.000821
1-3/M821.157620.479
2-1-1/M821.190370.457
2-1/M820.682930.74
2-6/M821.113080.452
3-2/M820.88321
4-1-1/M821.431161
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.403921
5-3/M820.975261
6-2/M821.313271
6-3/M820.972361
7-1/M821.00486
7-2/M821.107851
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.00638
IL2-6/WTpooled0.9211
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.923460.418
IL12-4/WTpooled0.905410.581
IL1-4/WTpooled0.932710.476
WT/WTpooled1.067820.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.022041

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.9361
DC3000/delta hrp 6h0.885290.95
DC3000/delta hrp 12h1.020691
DC3000/delta hrp 24h0.924970.543

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.911210.124
DC3000 delta B/DC3000 delta AB1.010030.748

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.767641
Exp 36h1.741431
Exp 60h1.00751

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.016891
Var 0h1.12960.98
Var 12h I row2-row11.089010.58
Var 12h NI row2-row11.118130.281
Var 36h I row2-row10.992931
Var 36h NI row2-row11.15461
Var 60h I row2-row11.163910.562
Var 60h NI row2-row11.12060.904
Time course 0hI-0hNI1.202030.182
Time course 12hI-12hNI0.939880.324
Time course 36hI-36hNI0.700060.023
Time course 60hI-60hNI0.620990.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.073810.654
transgenic ySAMdc/azygous control (breaker)0.823050.173
transgenic ySAMdc/azygous control (red)0.886831

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.025460.287

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.78260.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.94231
Manapal/WT (break)1.026941
Manapal/WT (red)1.035131