Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.1.9.14

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.18671	0.786
27DAP/17DAP	1.12437	0.849
39DAP/27DAP	0.79306	0.62
41DAP/39DAP	1.41598	0.473
42DAP/41DAP	1.25673	1
43DAP/42DAP	0.92329	0.877
47DAP/43DAP	1.26723	0.201
52DAP/47DAP	0.81199	0.564
57DAP/52DAP	0.95444	0.936

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.31265	0.35
17DAP/reference	1.21221	0.166
27DAP/reference	1.21614	0.82
39DAP/reference	1.38373	0.352
41DAP/reference	2.09267	0.012
42DAP/reference	1.50368	0.035
43DAP/reference	1.16479	0.617
47DAP/reference	1.07359	1
52DAP/reference	1.1932	0.114
57DAP/reference	0.9181	0.34

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.56011	0.311
27DAP/17DAP	N/A	N/A
39DAP/27DAP	1.61796	0.186
41DAP/39DAP	1.49056
42DAP/41DAP	1.67817	0.947
43DAP/42DAP	0.43198
47DAP/43DAP	1.36576	0.971
52DAP/47DAP	0.47201
57DAP/52DAP	N/A	N/A
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.58712	0.071
17DAP/reference	N/A	N/A
27DAP/reference	1.13682	0.551
39DAP/reference	1.60221	0.141
41DAP/reference	2.24028	0.191
42DAP/reference	0.57077
43DAP/reference	N/A	N/A
47DAP/reference	1.20514	0.791
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.81005	0.222
17DAP/reference	1.24809	0.674
27DAP/reference	1.38554	0.221
39DAP/reference	1.35041	0.146
41DAP/reference	0.98999	0.519
42DAP/reference	1.18373	0.294
43DAP/reference	1.56612	0.121
47DAP/reference	1.30547	0.021
52DAP/reference	1.52727	0.029
57DAP/reference	1.34426	0.538

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.50058
17DAP/reference	1.21657	0.026
27DAP/reference	N/A	N/A
39DAP/reference	1.59399	0.275
41DAP/reference	N/A	N/A
42DAP/reference	1.20703
43DAP/reference	1.00582	0.858
47DAP/reference	1.53192	0.006
52DAP/reference	1.38138
57DAP/reference	0.97352	0.652

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.25471	0.047
26DAP/20DAP	0.90706	1
34DAP/26DAP	1.22709	1
51DAP/34DAP	1.29578	0.795
52DAP/51DAP	0.92539
53DAP/52DAP	0.93942
55DAP/53DAP	0.51667	0.313
57DAP/55DAP	1.59914	0.016
62DAP/57DAP	N/A	N/A
68DAP/62DAP	0.25499
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	2.14821	0.391

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	1.07987	1
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	1.09622	1
IL12-4/WTpooled	1.0605	0.839
IL1-4/WTpooled	1.01988	1
WT/WTpooled	1.02134	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.12514	0.311
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.19605	0.204

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A