Expression of 1-1-5.1.9.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.65827 | 0.033 |
27DAP/17DAP | 1.08726 | 0.872 |
39DAP/27DAP | 1.72202 | 0.329 |
41DAP/39DAP | 0.74612 | 0.153 |
42DAP/41DAP | 2.50206 | 0.089 |
43DAP/42DAP | 1.00343 | 0.937 |
47DAP/43DAP | 1.31605 | 0.474 |
52DAP/47DAP | 0.46887 | 0.044 |
57DAP/52DAP | 1.25521 | 0.955 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16468 | 0.197 |
17DAP/reference | 0.97414 | 0.63 |
27DAP/reference | 0.88281 | 0.147 |
39DAP/reference | 1.13614 | 0.386 |
41DAP/reference | 0.90361 | 0.201 |
42DAP/reference | 1.10694 | 0.055 |
43DAP/reference | 1.05023 | 0.678 |
47DAP/reference | 0.96867 | 0.3 |
52DAP/reference | 0.81602 | 0.06 |
57DAP/reference | 0.96612 | 0.456 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99852 | 0.782 |
27DAP/17DAP | 0.94552 | 0.821 |
39DAP/27DAP | 1.30491 | 0.135 |
41DAP/39DAP | 1.51434 | 0.035 |
42DAP/41DAP | 0.82644 | 0.143 |
43DAP/42DAP | 0.79425 | 0.028 |
47DAP/43DAP | 1.33016 | 0.016 |
52DAP/47DAP | 0.9141 | 0.739 |
57DAP/52DAP | 0.95703 | 0.68 |
57DAP/7DAP | 0.80433 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97014 | 0.495 |
17DAP/reference | 0.88305 | 0.018 |
27DAP/reference | 1.32013 | 0.006 |
39DAP/reference | 0.89337 | 0.073 |
41DAP/reference | 1.00194 | 0.741 |
42DAP/reference | 0.90359 | 0.035 |
43DAP/reference | 0.98898 | 0.58 |
47DAP/reference | 0.94561 | 0.504 |
52DAP/reference | 1.06295 | 0.781 |
57DAP/reference | 1.04033 | 0.571 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16426 | 0.226 |
17DAP/reference | 1.00373 | 0.711 |
27DAP/reference | 1.07852 | 0.535 |
39DAP/reference | 0.85325 | 0.189 |
41DAP/reference | 0.94301 | 0.212 |
42DAP/reference | 1.1709 | 0.294 |
43DAP/reference | 1.44436 | 0.122 |
47DAP/reference | 1.42794 | 0.008 |
52DAP/reference | 0.68425 | 0.086 |
57DAP/reference | 1.43043 | 0.04 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22779 | 0.084 |
17DAP/reference | 0.98591 | 0.709 |
27DAP/reference | 1.07149 | 0.467 |
39DAP/reference | 1.06145 | 0.365 |
41DAP/reference | 0.97122 | 0.618 |
42DAP/reference | 1.05641 | 0.45 |
43DAP/reference | 1.03842 | 0.867 |
47DAP/reference | 1.00207 | 0.667 |
52DAP/reference | 1.30089 | 0.398 |
57DAP/reference | 0.89701 | 0.024 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.82097 | 0.585 |
26DAP/20DAP | 1.29887 | 0.604 |
34DAP/26DAP | 1.41868 | 0.819 |
51DAP/34DAP | 0.76527 | 0.18 |
52DAP/51DAP | 1.02386 | 1 |
53DAP/52DAP | 1.11831 | 0.738 |
55DAP/53DAP | 1.09066 | 0.939 |
57DAP/55DAP | 1.12775 | 0.854 |
62DAP/57DAP | 1.37305 | 0.393 |
68DAP/62DAP | 1.12686 | 0.872 |
68DAP/14DAP | 0.70446 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.76439 | 0.068 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.15662 | |
Mature Green Tomato/Ripe Tomato | 0.26533 | 0.017 |
Immature Eggplant/Mature Eggplant | 7.62914 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.46607 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.25044 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07901 | 0.877 |
1-1-2/M82 | 1.35201 | 1 |
12-2/M82 | 1.49808 | 1 |
12-4/M82 | 1.42008 | 1 |
1-3/M82 | 1.04949 | 0.248 |
2-1-1/M82 | 0.7182 | |
2-1/M82 | 0.54867 | |
2-6/M82 | 1.06459 | 0.695 |
3-2/M82 | 0.93506 | 1 |
4-1-1/M82 | 1.37053 | 1 |
4-1/M82 | 1.06643 | |
4-3-2/M82 | 2.45904 | 0.241 |
4-3/M82 | 2.28706 | 0.268 |
5-3/M82 | 0.80855 | 0.49 |
6-2/M82 | 1.93764 | 1 |
6-3/M82 | 0.66708 | 0.916 |
7-1/M82 | 0.62899 | |
7-2/M82 | 1.12888 | 0.282 |
9-3-2/M82 | 1.57809 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.742 | 0.247 |
IL2-6/WTpooled | 3.42252 | 0.46 |
IL7-5/WTpooled | 1.03629 | 1 |
IL7-3/WTpooled | 0.71499 | 1 |
IL12-4/WTpooled | 0.88489 | 1 |
IL1-4/WTpooled | 0.99486 | 1 |
WT/WTpooled | 0.96558 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.71638 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03532 | 0.921 |
DC3000/delta hrp 6h | 1.07506 | 1 |
DC3000/delta hrp 12h | 1.08952 | 1 |
DC3000/delta hrp 24h | 0.9435 | 0.575 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.16735 | |
DC3000 delta B/DC3000 delta AB | 2.41399 | 0.086 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.23981 | 0.254 |
Exp 36h | 2.30565 | 0.489 |
Exp 60h | 1.78205 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00016 | 1 |
Var 0h | 1.07924 | 0.98 |
Var 12h I row2-row1 | 1.0929 | 0.736 |
Var 12h NI row2-row1 | 1.18527 | 0.649 |
Var 36h I row2-row1 | 1.15292 | 0.908 |
Var 36h NI row2-row1 | 0.62537 | 0.413 |
Var 60h I row2-row1 | 1.12368 | 1 |
Var 60h NI row2-row1 | 0.63787 | 0.306 |
Time course 0hI-0hNI | 1.10128 | 0.537 |
Time course 12hI-12hNI | 2.28718 | 0.005 |
Time course 36hI-36hNI | 5.38354 | 0.005 |
Time course 60hI-60hNI | 18.8518 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99221 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.53783 | 0.139 |
transgenic ySAMdc/azygous control (red) | 1.06785 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08574 | 0.204 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.30811 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.24531 | 1 |
Manapal/WT (break) | 1.30891 | 1 |
Manapal/WT (red) | 0.69541 | 0.503 |
|
|