Expression of 1-1-5.1.9.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.658270.033
27DAP/17DAP1.087260.872
39DAP/27DAP1.722020.329
41DAP/39DAP0.746120.153
42DAP/41DAP2.502060.089
43DAP/42DAP1.003430.937
47DAP/43DAP1.316050.474
52DAP/47DAP0.468870.044
57DAP/52DAP1.255210.955

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.164680.197
17DAP/reference0.974140.63
27DAP/reference0.882810.147
39DAP/reference1.136140.386
41DAP/reference0.903610.201
42DAP/reference1.106940.055
43DAP/reference1.050230.678
47DAP/reference0.968670.3
52DAP/reference0.816020.06
57DAP/reference0.966120.456

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.998520.782
27DAP/17DAP0.945520.821
39DAP/27DAP1.304910.135
41DAP/39DAP1.514340.035
42DAP/41DAP0.826440.143
43DAP/42DAP0.794250.028
47DAP/43DAP1.330160.016
52DAP/47DAP0.91410.739
57DAP/52DAP0.957030.68
57DAP/7DAP0.804331

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.970140.495
17DAP/reference0.883050.018
27DAP/reference1.320130.006
39DAP/reference0.893370.073
41DAP/reference1.001940.741
42DAP/reference0.903590.035
43DAP/reference0.988980.58
47DAP/reference0.945610.504
52DAP/reference1.062950.781
57DAP/reference1.040330.571

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.164260.226
17DAP/reference1.003730.711
27DAP/reference1.078520.535
39DAP/reference0.853250.189
41DAP/reference0.943010.212
42DAP/reference1.17090.294
43DAP/reference1.444360.122
47DAP/reference1.427940.008
52DAP/reference0.684250.086
57DAP/reference1.430430.04

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.227790.084
17DAP/reference0.985910.709
27DAP/reference1.071490.467
39DAP/reference1.061450.365
41DAP/reference0.971220.618
42DAP/reference1.056410.45
43DAP/reference1.038420.867
47DAP/reference1.002070.667
52DAP/reference1.300890.398
57DAP/reference0.897010.024

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.820970.585
26DAP/20DAP1.298870.604
34DAP/26DAP1.418680.819
51DAP/34DAP0.765270.18
52DAP/51DAP1.023861
53DAP/52DAP1.118310.738
55DAP/53DAP1.090660.939
57DAP/55DAP1.127750.854
62DAP/57DAP1.373050.393
68DAP/62DAP1.126860.872
68DAP/14DAP0.704461

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.764390.068

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.15662
Mature Green Tomato/Ripe Tomato0.265330.017
Immature Eggplant/Mature Eggplant7.629140.05
Ripe Pepper/Ripe Tomato0.466070.293
Mature Eggplant/Ripe Tomato0.250440.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.079010.877
1-1-2/M821.352011
12-2/M821.498081
12-4/M821.420081
1-3/M821.049490.248
2-1-1/M820.7182
2-1/M820.54867
2-6/M821.064590.695
3-2/M820.935061
4-1-1/M821.370531
4-1/M821.06643
4-3-2/M822.459040.241
4-3/M822.287060.268
5-3/M820.808550.49
6-2/M821.937641
6-3/M820.667080.916
7-1/M820.62899
7-2/M821.128880.282
9-3-2/M821.578091

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.7420.247
IL2-6/WTpooled3.422520.46
IL7-5/WTpooled1.036291
IL7-3/WTpooled0.714991
IL12-4/WTpooled0.884891
IL1-4/WTpooled0.994861
WT/WTpooled0.965581

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.716380.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.035320.921
DC3000/delta hrp 6h1.075061
DC3000/delta hrp 12h1.089521
DC3000/delta hrp 24h0.94350.575

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.16735
DC3000 delta B/DC3000 delta AB2.413990.086

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.239810.254
Exp 36h2.305650.489
Exp 60h1.782050.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.000161
Var 0h1.079240.98
Var 12h I row2-row11.09290.736
Var 12h NI row2-row11.185270.649
Var 36h I row2-row11.152920.908
Var 36h NI row2-row10.625370.413
Var 60h I row2-row11.123681
Var 60h NI row2-row10.637870.306
Time course 0hI-0hNI1.101280.537
Time course 12hI-12hNI2.287180.005
Time course 36hI-36hNI5.383540.005
Time course 60hI-60hNI18.85180.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.992210.862
transgenic ySAMdc/azygous control (breaker)0.537830.139
transgenic ySAMdc/azygous control (red)1.067851

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.085740.204

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.308110.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.245311
Manapal/WT (break)1.308911
Manapal/WT (red)0.695410.503