Expression of 1-1-5.2.1.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17435 | 0.523 |
27DAP/17DAP | 1.11484 | 0.849 |
39DAP/27DAP | 1.82715 | 0.078 |
41DAP/39DAP | 0.76533 | 0.216 |
42DAP/41DAP | 1.08605 | 0.978 |
43DAP/42DAP | 1.04179 | 1 |
47DAP/43DAP | 1.03574 | 0.702 |
52DAP/47DAP | 1.15652 | 0.772 |
57DAP/52DAP | 0.87625 | 0.765 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93851 | 0.371 |
17DAP/reference | 1.1354 | 0.258 |
27DAP/reference | 1.23137 | 0.132 |
39DAP/reference | 1.47313 | 0.062 |
41DAP/reference | 1.22625 | 0.111 |
42DAP/reference | 1.69172 | 0.001 |
43DAP/reference | 1.38376 | 0.014 |
47DAP/reference | 2.019 | 0.001 |
52DAP/reference | 1.47489 | 0.011 |
57DAP/reference | 1.46875 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.41879 | 0.051 |
27DAP/17DAP | 0.99733 | 0.969 |
39DAP/27DAP | 0.90545 | 0.311 |
41DAP/39DAP | 1.14667 | 1 |
42DAP/41DAP | 1.17629 | 0.436 |
43DAP/42DAP | 0.90507 | 0.101 |
47DAP/43DAP | 1.03344 | 0.892 |
52DAP/47DAP | 1.01293 | 0.986 |
57DAP/52DAP | 0.82935 | 0.264 |
57DAP/7DAP | 1.16993 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15327 | 0.205 |
17DAP/reference | 1.13184 | 0.054 |
27DAP/reference | 1.43357 | 0.015 |
39DAP/reference | 1.60517 | 0.005 |
41DAP/reference | 1.66733 | 0.008 |
42DAP/reference | 1.81444 | 0.007 |
43DAP/reference | 1.73899 | 0.006 |
47DAP/reference | 1.80884 | 0.014 |
52DAP/reference | 2.21285 | 0.007 |
57DAP/reference | 1.98724 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95055 | 0.532 |
17DAP/reference | 1.30754 | 0.055 |
27DAP/reference | 1.61917 | 0.028 |
39DAP/reference | 1.71802 | 0.014 |
41DAP/reference | 1.55898 | 0.011 |
42DAP/reference | 1.60109 | 0.023 |
43DAP/reference | 1.41225 | 0.114 |
47DAP/reference | 1.63929 | 0.012 |
52DAP/reference | 1.23725 | 0.006 |
57DAP/reference | 1.16676 | 0.269 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91441 | 0.036 |
17DAP/reference | 0.97207 | 0.647 |
27DAP/reference | 1.21074 | 0.024 |
39DAP/reference | 1.32335 | 0.011 |
41DAP/reference | 1.39024 | 0.012 |
42DAP/reference | 1.79424 | 0.007 |
43DAP/reference | 2.2268 | 0.016 |
47DAP/reference | 1.70654 | 0.018 |
52DAP/reference | 1.65104 | 0.032 |
57DAP/reference | 2.7115 | 0.015 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97303 | 1 |
26DAP/20DAP | 1.23515 | 0.394 |
34DAP/26DAP | 1.2974 | 0.819 |
51DAP/34DAP | 0.74854 | 0.085 |
52DAP/51DAP | 0.75472 | 0.151 |
53DAP/52DAP | 1.14893 | 0.117 |
55DAP/53DAP | 0.91412 | 0.313 |
57DAP/55DAP | 1.30622 | 0.626 |
62DAP/57DAP | 2.04674 | 0.002 |
68DAP/62DAP | 1.00068 | 0.914 |
68DAP/14DAP | 3.96212 | 0.022 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.23409 | 0.326 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.75695 | 0.219 |
Mature Green Tomato/Ripe Tomato | 1.35062 | 0.331 |
Immature Eggplant/Mature Eggplant | 1.21814 | 0.056 |
Ripe Pepper/Ripe Tomato | 1.80984 | 1 |
Mature Eggplant/Ripe Tomato | 0.79681 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.88917 | 0.907 |
1-1-2/M82 | 1.16144 | 1 |
12-2/M82 | 0.97735 | 0.955 |
12-4/M82 | 1.02035 | 1 |
1-3/M82 | 1.132 | 1 |
2-1-1/M82 | 0.92191 | 0.465 |
2-1/M82 | 0.96937 | 1 |
2-6/M82 | 0.91922 | 1 |
3-2/M82 | 0.96046 | 1 |
4-1-1/M82 | 0.93331 | 1 |
4-1/M82 | 0.58894 | 1 |
4-3-2/M82 | 1.11491 | 0.508 |
4-3/M82 | 0.89637 | 0.72 |
5-3/M82 | 0.99484 | 1 |
6-2/M82 | 0.94262 | 1 |
6-3/M82 | 1.03099 | 1 |
7-1/M82 | 1.12173 | 0.598 |
7-2/M82 | 1.05251 | 1 |
9-3-2/M82 | 1.05707 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.84184 | 0.321 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.67266 | 1 |
IL7-3/WTpooled | 2.36584 | |
IL12-4/WTpooled | 0.92959 | 1 |
IL1-4/WTpooled | 0.98078 | 1 |
WT/WTpooled | 0.9591 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.28562 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05816 | 0.724 |
DC3000/delta hrp 6h | 0.98489 | 0.95 |
DC3000/delta hrp 12h | 1.0852 | 1 |
DC3000/delta hrp 24h | 0.94444 | 0.543 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.16959 | 0.208 |
DC3000 delta B/DC3000 delta AB | 1.15151 | 0.429 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.19082 | 1 |
Exp 36h | 1.14793 | 1 |
Exp 60h | 0.97647 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00759 | 1 |
Var 0h | 0.63375 | 0.594 |
Var 12h I row2-row1 | 1.04699 | 0.613 |
Var 12h NI row2-row1 | 0.98896 | 1 |
Var 36h I row2-row1 | 1.20408 | 0.908 |
Var 36h NI row2-row1 | 0.92538 | 0.706 |
Var 60h I row2-row1 | 0.98086 | 1 |
Var 60h NI row2-row1 | 0.87371 | 0.458 |
Time course 0hI-0hNI | 1.0499 | 0.603 |
Time course 12hI-12hNI | 1.09759 | 0.517 |
Time course 36hI-36hNI | 0.98825 | 0.644 |
Time course 60hI-60hNI | 1.32969 | 0.037 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.8698 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 1.02628 | 1 |
transgenic ySAMdc/azygous control (red) | 1.18768 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.15258 | 0.115 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.50259 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.79061 | 1 |
Manapal/WT (break) | 0.89036 | 1 |
Manapal/WT (red) | 1.07281 | 1 |
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