Expression of 1-1-5.2.1.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.174350.523
27DAP/17DAP1.114840.849
39DAP/27DAP1.827150.078
41DAP/39DAP0.765330.216
42DAP/41DAP1.086050.978
43DAP/42DAP1.041791
47DAP/43DAP1.035740.702
52DAP/47DAP1.156520.772
57DAP/52DAP0.876250.765

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.938510.371
17DAP/reference1.13540.258
27DAP/reference1.231370.132
39DAP/reference1.473130.062
41DAP/reference1.226250.111
42DAP/reference1.691720.001
43DAP/reference1.383760.014
47DAP/reference2.0190.001
52DAP/reference1.474890.011
57DAP/reference1.468750.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.418790.051
27DAP/17DAP0.997330.969
39DAP/27DAP0.905450.311
41DAP/39DAP1.146671
42DAP/41DAP1.176290.436
43DAP/42DAP0.905070.101
47DAP/43DAP1.033440.892
52DAP/47DAP1.012930.986
57DAP/52DAP0.829350.264
57DAP/7DAP1.169931

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.153270.205
17DAP/reference1.131840.054
27DAP/reference1.433570.015
39DAP/reference1.605170.005
41DAP/reference1.667330.008
42DAP/reference1.814440.007
43DAP/reference1.738990.006
47DAP/reference1.808840.014
52DAP/reference2.212850.007
57DAP/reference1.987240.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.950550.532
17DAP/reference1.307540.055
27DAP/reference1.619170.028
39DAP/reference1.718020.014
41DAP/reference1.558980.011
42DAP/reference1.601090.023
43DAP/reference1.412250.114
47DAP/reference1.639290.012
52DAP/reference1.237250.006
57DAP/reference1.166760.269

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.914410.036
17DAP/reference0.972070.647
27DAP/reference1.210740.024
39DAP/reference1.323350.011
41DAP/reference1.390240.012
42DAP/reference1.794240.007
43DAP/reference2.22680.016
47DAP/reference1.706540.018
52DAP/reference1.651040.032
57DAP/reference2.71150.015

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.973031
26DAP/20DAP1.235150.394
34DAP/26DAP1.29740.819
51DAP/34DAP0.748540.085
52DAP/51DAP0.754720.151
53DAP/52DAP1.148930.117
55DAP/53DAP0.914120.313
57DAP/55DAP1.306220.626
62DAP/57DAP2.046740.002
68DAP/62DAP1.000680.914
68DAP/14DAP3.962120.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.234090.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.756950.219
Mature Green Tomato/Ripe Tomato1.350620.331
Immature Eggplant/Mature Eggplant1.218140.056
Ripe Pepper/Ripe Tomato1.809841
Mature Eggplant/Ripe Tomato0.796811

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.889170.907
1-1-2/M821.161441
12-2/M820.977350.955
12-4/M821.020351
1-3/M821.1321
2-1-1/M820.921910.465
2-1/M820.969371
2-6/M820.919221
3-2/M820.960461
4-1-1/M820.933311
4-1/M820.588941
4-3-2/M821.114910.508
4-3/M820.896370.72
5-3/M820.994841
6-2/M820.942621
6-3/M821.030991
7-1/M821.121730.598
7-2/M821.052511
9-3-2/M821.057071

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.841840.321
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.672661
IL7-3/WTpooled2.36584
IL12-4/WTpooled0.929591
IL1-4/WTpooled0.980781
WT/WTpooled0.95911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.285620.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.058160.724
DC3000/delta hrp 6h0.984890.95
DC3000/delta hrp 12h1.08521
DC3000/delta hrp 24h0.944440.543

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.169590.208
DC3000 delta B/DC3000 delta AB1.151510.429

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.190821
Exp 36h1.147931
Exp 60h0.976470.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.007591
Var 0h0.633750.594
Var 12h I row2-row11.046990.613
Var 12h NI row2-row10.988961
Var 36h I row2-row11.204080.908
Var 36h NI row2-row10.925380.706
Var 60h I row2-row10.980861
Var 60h NI row2-row10.873710.458
Time course 0hI-0hNI1.04990.603
Time course 12hI-12hNI1.097590.517
Time course 36hI-36hNI0.988250.644
Time course 60hI-60hNI1.329690.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.86980.338
transgenic ySAMdc/azygous control (breaker)1.026281
transgenic ySAMdc/azygous control (red)1.187680.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.152580.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.502590.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.790611
Manapal/WT (break)0.890361
Manapal/WT (red)1.072811