Expression of 1-1-5.2.1.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98658 | 0.823 |
27DAP/17DAP | 0.93892 | 0.899 |
39DAP/27DAP | 0.83099 | 0.522 |
41DAP/39DAP | 1.20233 | 0.53 |
42DAP/41DAP | 1.1661 | 0.933 |
43DAP/42DAP | 0.92606 | 0.867 |
47DAP/43DAP | 0.93835 | 0.773 |
52DAP/47DAP | 1.6415 | 0.255 |
57DAP/52DAP | 0.95049 | 0.94 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92349 | 0.125 |
17DAP/reference | 1.00647 | 0.874 |
27DAP/reference | 0.95614 | 0.406 |
39DAP/reference | 0.99861 | 1 |
41DAP/reference | 0.99976 | 1 |
42DAP/reference | 0.94276 | 0.085 |
43DAP/reference | 1.0165 | 0.787 |
47DAP/reference | 0.90484 | 0.021 |
52DAP/reference | 0.85964 | 0.128 |
57DAP/reference | 0.80478 | 0.059 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85741 | 0.194 |
27DAP/17DAP | 1.02698 | 0.951 |
39DAP/27DAP | 1.10338 | 0.403 |
41DAP/39DAP | 1.07484 | 0.88 |
42DAP/41DAP | 1.08873 | 0.663 |
43DAP/42DAP | 0.97792 | 0.774 |
47DAP/43DAP | 0.98236 | 0.928 |
52DAP/47DAP | 0.94672 | 0.814 |
57DAP/52DAP | 0.94957 | 0.415 |
57DAP/7DAP | 0.93311 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88564 | 0.066 |
17DAP/reference | 0.97993 | 0.389 |
27DAP/reference | 0.95729 | 0.076 |
39DAP/reference | 0.94313 | 0.031 |
41DAP/reference | 0.8687 | 0.012 |
42DAP/reference | 0.82984 | 0.01 |
43DAP/reference | 0.86828 | 0.046 |
47DAP/reference | 0.93749 | 0.101 |
52DAP/reference | 0.81777 | 0.061 |
57DAP/reference | 0.82645 | 0.028 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05005 | 0.495 |
17DAP/reference | 0.97948 | 0.51 |
27DAP/reference | 0.88764 | 0.155 |
39DAP/reference | 0.92932 | 0.132 |
41DAP/reference | 0.89414 | 0.124 |
42DAP/reference | 0.85732 | 0.067 |
43DAP/reference | 1.02005 | 0.957 |
47DAP/reference | 0.90785 | 0.11 |
52DAP/reference | 1.02208 | 0.838 |
57DAP/reference | 1.12453 | 0.172 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00491 | 1 |
17DAP/reference | 0.96854 | 0.579 |
27DAP/reference | 0.95726 | 0.302 |
39DAP/reference | 0.92371 | 0.04 |
41DAP/reference | 0.9512 | 0.132 |
42DAP/reference | 0.84807 | 0.22 |
43DAP/reference | 0.82745 | 0.102 |
47DAP/reference | 1.00044 | 0.687 |
52DAP/reference | 0.94614 | 0.455 |
57DAP/reference | 0.61596 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.15829 | 0.878 |
26DAP/20DAP | 0.87514 | 1 |
34DAP/26DAP | 1.1136 | 1 |
51DAP/34DAP | 1.08897 | 0.627 |
52DAP/51DAP | 1.05402 | 0.638 |
53DAP/52DAP | 1.03352 | 0.83 |
55DAP/53DAP | 1.24407 | 0.306 |
57DAP/55DAP | 2.37839 | 0.666 |
62DAP/57DAP | 1.16074 | 0.622 |
68DAP/62DAP | 0.7728 | 0.641 |
68DAP/14DAP | 0.88349 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07131 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.48766 | 0.109 |
Mature Green Tomato/Ripe Tomato | 1.36825 | 0.632 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 2.33162 | 0.256 |
Mature Eggplant/Ripe Tomato | 0.5225 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97648 | 0.961 |
1-1-2/M82 | 0.95245 | 1 |
12-2/M82 | 1.23347 | |
12-4/M82 | 0.95433 | 1 |
1-3/M82 | 0.91493 | 0.501 |
2-1-1/M82 | 1.22827 | 0.354 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.06277 | 0.695 |
3-2/M82 | 0.91532 | 1 |
4-1-1/M82 | 0.97575 | 1 |
4-1/M82 | 0.9932 | 1 |
4-3-2/M82 | 0.94198 | 1 |
4-3/M82 | 0.92811 | 1 |
5-3/M82 | 0.89984 | 0.642 |
6-2/M82 | 0.93608 | |
6-3/M82 | 0.97131 | 0.982 |
7-1/M82 | 1.10715 | |
7-2/M82 | 0.99997 | 1 |
9-3-2/M82 | 0.76992 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.90613 | 1 |
IL2-6/WTpooled | 1.25662 | 0.427 |
IL7-5/WTpooled | 1.09755 | 0.792 |
IL7-3/WTpooled | 1.00837 | 1 |
IL12-4/WTpooled | 0.83104 | 0.71 |
IL1-4/WTpooled | 0.97585 | 1 |
WT/WTpooled | 0.90425 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05701 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99505 | 1 |
DC3000/delta hrp 6h | 1.14977 | 1 |
DC3000/delta hrp 12h | 1.22464 | 1 |
DC3000/delta hrp 24h | 0.95875 | 0.711 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.22238 | 0.16 |
DC3000 delta B/DC3000 delta AB | 1.13516 | 0.327 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96784 | 1 |
Exp 36h | 0.75055 | 0.539 |
Exp 60h | 0.70947 | 0.278 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98024 | 1 |
Var 0h | 0.52663 | 0.594 |
Var 12h I row2-row1 | 1.13353 | 0.211 |
Var 12h NI row2-row1 | 1.08685 | 1 |
Var 36h I row2-row1 | 0.96953 | 1 |
Var 36h NI row2-row1 | 0.95656 | 0.706 |
Var 60h I row2-row1 | 1.71394 | 1 |
Var 60h NI row2-row1 | 1.1416 | 0.904 |
Time course 0hI-0hNI | 1.01984 | 1 |
Time course 12hI-12hNI | 0.96305 | 0.716 |
Time course 36hI-36hNI | 0.87188 | 0.023 |
Time course 60hI-60hNI | 0.86562 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10825 | 0.431 |
transgenic ySAMdc/azygous control (breaker) | 1.25162 | 0.162 |
transgenic ySAMdc/azygous control (red) | 0.98701 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02045 | 0.301 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.32252 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.60753 | 0.105 |
Manapal/WT (break) | 1.53736 | 0.381 |
Manapal/WT (red) | 1.5303 | 0.142 |
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