Expression of 1-1-5.2.1.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.986580.823
27DAP/17DAP0.938920.899
39DAP/27DAP0.830990.522
41DAP/39DAP1.202330.53
42DAP/41DAP1.16610.933
43DAP/42DAP0.926060.867
47DAP/43DAP0.938350.773
52DAP/47DAP1.64150.255
57DAP/52DAP0.950490.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.923490.125
17DAP/reference1.006470.874
27DAP/reference0.956140.406
39DAP/reference0.998611
41DAP/reference0.999761
42DAP/reference0.942760.085
43DAP/reference1.01650.787
47DAP/reference0.904840.021
52DAP/reference0.859640.128
57DAP/reference0.804780.059

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.857410.194
27DAP/17DAP1.026980.951
39DAP/27DAP1.103380.403
41DAP/39DAP1.074840.88
42DAP/41DAP1.088730.663
43DAP/42DAP0.977920.774
47DAP/43DAP0.982360.928
52DAP/47DAP0.946720.814
57DAP/52DAP0.949570.415
57DAP/7DAP0.933111

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.885640.066
17DAP/reference0.979930.389
27DAP/reference0.957290.076
39DAP/reference0.943130.031
41DAP/reference0.86870.012
42DAP/reference0.829840.01
43DAP/reference0.868280.046
47DAP/reference0.937490.101
52DAP/reference0.817770.061
57DAP/reference0.826450.028

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.050050.495
17DAP/reference0.979480.51
27DAP/reference0.887640.155
39DAP/reference0.929320.132
41DAP/reference0.894140.124
42DAP/reference0.857320.067
43DAP/reference1.020050.957
47DAP/reference0.907850.11
52DAP/reference1.022080.838
57DAP/reference1.124530.172

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.004911
17DAP/reference0.968540.579
27DAP/reference0.957260.302
39DAP/reference0.923710.04
41DAP/reference0.95120.132
42DAP/reference0.848070.22
43DAP/reference0.827450.102
47DAP/reference1.000440.687
52DAP/reference0.946140.455
57DAP/reference0.615960.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.158290.878
26DAP/20DAP0.875141
34DAP/26DAP1.11361
51DAP/34DAP1.088970.627
52DAP/51DAP1.054020.638
53DAP/52DAP1.033520.83
55DAP/53DAP1.244070.306
57DAP/55DAP2.378390.666
62DAP/57DAP1.160740.622
68DAP/62DAP0.77280.641
68DAP/14DAP0.883491

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.071311

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.487660.109
Mature Green Tomato/Ripe Tomato1.368250.632
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato2.331620.256
Mature Eggplant/Ripe Tomato0.5225

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.976480.961
1-1-2/M820.952451
12-2/M821.23347
12-4/M820.954331
1-3/M820.914930.501
2-1-1/M821.228270.354
2-1/M82N/AN/A
2-6/M821.062770.695
3-2/M820.915321
4-1-1/M820.975751
4-1/M820.99321
4-3-2/M820.941981
4-3/M820.928111
5-3/M820.899840.642
6-2/M820.93608
6-3/M820.971310.982
7-1/M821.10715
7-2/M820.999971
9-3-2/M820.769920.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.906131
IL2-6/WTpooled1.256620.427
IL7-5/WTpooled1.097550.792
IL7-3/WTpooled1.008371
IL12-4/WTpooled0.831040.71
IL1-4/WTpooled0.975851
WT/WTpooled0.904251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.057011

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.995051
DC3000/delta hrp 6h1.149771
DC3000/delta hrp 12h1.224641
DC3000/delta hrp 24h0.958750.711

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.222380.16
DC3000 delta B/DC3000 delta AB1.135160.327

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.967841
Exp 36h0.750550.539
Exp 60h0.709470.278

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980241
Var 0h0.526630.594
Var 12h I row2-row11.133530.211
Var 12h NI row2-row11.086851
Var 36h I row2-row10.969531
Var 36h NI row2-row10.956560.706
Var 60h I row2-row11.713941
Var 60h NI row2-row11.14160.904
Time course 0hI-0hNI1.019841
Time course 12hI-12hNI0.963050.716
Time course 36hI-36hNI0.871880.023
Time course 60hI-60hNI0.865620.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.108250.431
transgenic ySAMdc/azygous control (breaker)1.251620.162
transgenic ySAMdc/azygous control (red)0.987011

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.020450.301

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.322520.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.607530.105
Manapal/WT (break)1.537360.381
Manapal/WT (red)1.53030.142