Expression of 1-1-5.2.1.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.612230.02
27DAP/17DAP0.55970.04
39DAP/27DAP0.65780.315
41DAP/39DAP0.764580.223
42DAP/41DAP0.968061
43DAP/42DAP1.283760.546
47DAP/43DAP0.912880.696
52DAP/47DAP0.723580.29
57DAP/52DAP1.062690.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.449650.015
17DAP/reference1.128340.342
27DAP/reference0.960610.525
39DAP/reference0.980920.734
41DAP/reference0.854530.114
42DAP/reference0.997450.567
43DAP/reference0.883660.039
47DAP/reference0.797330.005
52DAP/reference0.711940.013
57DAP/reference0.784380.012

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.788250.044
27DAP/17DAP1.035750.909
39DAP/27DAP0.666460.041
41DAP/39DAP0.881890.384
42DAP/41DAP0.872280.332
43DAP/42DAP0.842660.068
47DAP/43DAP0.933870.637
52DAP/47DAP0.844290.591
57DAP/52DAP1.038541
57DAP/7DAP0.362990.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.563740.027
17DAP/reference1.006481
27DAP/reference0.835350.01
39DAP/reference0.835050.095
41DAP/reference0.734680.016
42DAP/reference0.73030.011
43DAP/reference0.619880.015
47DAP/reference0.748640.079
52DAP/reference0.695660.014
57DAP/reference0.736510.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.429260.066
17DAP/reference1.24320.039
27DAP/reference0.956350.423
39DAP/reference0.737390.024
41DAP/reference0.833980.061
42DAP/reference1.022271
43DAP/reference0.836750.027
47DAP/reference0.825550.045
52DAP/reference0.620220.004
57DAP/reference0.612080.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.374340.015
17DAP/reference1.468960.093
27DAP/reference0.95830.376
39DAP/reference0.862880.058
41DAP/reference0.831650.107
42DAP/reference0.836660.036
43DAP/reference0.81140.084
47DAP/reference0.783880.019
52DAP/reference0.764490.122
57DAP/reference0.886440.18

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.942331
26DAP/20DAP1.373560.196
34DAP/26DAP0.827970.144
51DAP/34DAP0.956440.727
52DAP/51DAP0.868071
53DAP/52DAP0.774390.066
55DAP/53DAP0.59990.016
57DAP/55DAP0.949640.783
62DAP/57DAP1.112960.445
68DAP/62DAP0.878570.668
68DAP/14DAP0.401940.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.272240.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.712450.058
Mature Green Tomato/Ripe Tomato5.07020.015
Immature Eggplant/Mature Eggplant0.481640.062
Ripe Pepper/Ripe Tomato2.517811
Mature Eggplant/Ripe Tomato9.754090.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.997191
1-1-2/M821.226361
12-2/M82N/AN/A
12-4/M821.139221
1-3/M820.824350.441
2-1-1/M820.94161
2-1/M82N/AN/A
2-6/M821.13010.339
3-2/M820.83274
4-1-1/M820.927621
4-1/M821.20548
4-3-2/M821.2744
4-3/M821.137711
5-3/M820.929621
6-2/M820.745550.481
6-3/M820.87424
7-1/M820.9255
7-2/M820.912890.796
9-3-2/M821.3139

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.729940.247
IL2-6/WTpooled1.160560.46
IL7-5/WTpooled1.102541
IL7-3/WTpooled0.581880.31
IL12-4/WTpooled1.008390.839
IL1-4/WTpooled1.061281
WT/WTpooled0.959781

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.882160.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.01560.914
DC3000/delta hrp 6h0.963390.95
DC3000/delta hrp 12h0.977751
DC3000/delta hrp 24h0.454690.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.434980.024
DC3000 delta B/DC3000 delta AB0.459620.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.018081
Exp 36h0.79870.589
Exp 60h0.69820.251

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.016121
Var 0h0.493291
Var 12h I row2-row10.726710.338
Var 12h NI row2-row11.038861
Var 36h I row2-row10.951530.805
Var 36h NI row2-row11.171320.482
Var 60h I row2-row11.017881
Var 60h NI row2-row11.038031
Time course 0hI-0hNI0.997861
Time course 12hI-12hNI1.002141
Time course 36hI-36hNI0.84730.031
Time course 60hI-60hNI0.154090.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.849580.299
transgenic ySAMdc/azygous control (breaker)1.100350.178
transgenic ySAMdc/azygous control (red)1.13440.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.965670.122

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.168930.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.146990.088
Manapal/WT (break)2.530140.13
Manapal/WT (red)1.744870.142