Expression of 1-1-5.2.1.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.61223 | 0.02 |
27DAP/17DAP | 0.5597 | 0.04 |
39DAP/27DAP | 0.6578 | 0.315 |
41DAP/39DAP | 0.76458 | 0.223 |
42DAP/41DAP | 0.96806 | 1 |
43DAP/42DAP | 1.28376 | 0.546 |
47DAP/43DAP | 0.91288 | 0.696 |
52DAP/47DAP | 0.72358 | 0.29 |
57DAP/52DAP | 1.06269 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.44965 | 0.015 |
17DAP/reference | 1.12834 | 0.342 |
27DAP/reference | 0.96061 | 0.525 |
39DAP/reference | 0.98092 | 0.734 |
41DAP/reference | 0.85453 | 0.114 |
42DAP/reference | 0.99745 | 0.567 |
43DAP/reference | 0.88366 | 0.039 |
47DAP/reference | 0.79733 | 0.005 |
52DAP/reference | 0.71194 | 0.013 |
57DAP/reference | 0.78438 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78825 | 0.044 |
27DAP/17DAP | 1.03575 | 0.909 |
39DAP/27DAP | 0.66646 | 0.041 |
41DAP/39DAP | 0.88189 | 0.384 |
42DAP/41DAP | 0.87228 | 0.332 |
43DAP/42DAP | 0.84266 | 0.068 |
47DAP/43DAP | 0.93387 | 0.637 |
52DAP/47DAP | 0.84429 | 0.591 |
57DAP/52DAP | 1.03854 | 1 |
57DAP/7DAP | 0.36299 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.56374 | 0.027 |
17DAP/reference | 1.00648 | 1 |
27DAP/reference | 0.83535 | 0.01 |
39DAP/reference | 0.83505 | 0.095 |
41DAP/reference | 0.73468 | 0.016 |
42DAP/reference | 0.7303 | 0.011 |
43DAP/reference | 0.61988 | 0.015 |
47DAP/reference | 0.74864 | 0.079 |
52DAP/reference | 0.69566 | 0.014 |
57DAP/reference | 0.73651 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42926 | 0.066 |
17DAP/reference | 1.2432 | 0.039 |
27DAP/reference | 0.95635 | 0.423 |
39DAP/reference | 0.73739 | 0.024 |
41DAP/reference | 0.83398 | 0.061 |
42DAP/reference | 1.02227 | 1 |
43DAP/reference | 0.83675 | 0.027 |
47DAP/reference | 0.82555 | 0.045 |
52DAP/reference | 0.62022 | 0.004 |
57DAP/reference | 0.61208 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.37434 | 0.015 |
17DAP/reference | 1.46896 | 0.093 |
27DAP/reference | 0.9583 | 0.376 |
39DAP/reference | 0.86288 | 0.058 |
41DAP/reference | 0.83165 | 0.107 |
42DAP/reference | 0.83666 | 0.036 |
43DAP/reference | 0.8114 | 0.084 |
47DAP/reference | 0.78388 | 0.019 |
52DAP/reference | 0.76449 | 0.122 |
57DAP/reference | 0.88644 | 0.18 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94233 | 1 |
26DAP/20DAP | 1.37356 | 0.196 |
34DAP/26DAP | 0.82797 | 0.144 |
51DAP/34DAP | 0.95644 | 0.727 |
52DAP/51DAP | 0.86807 | 1 |
53DAP/52DAP | 0.77439 | 0.066 |
55DAP/53DAP | 0.5999 | 0.016 |
57DAP/55DAP | 0.94964 | 0.783 |
62DAP/57DAP | 1.11296 | 0.445 |
68DAP/62DAP | 0.87857 | 0.668 |
68DAP/14DAP | 0.40194 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.27224 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.71245 | 0.058 |
Mature Green Tomato/Ripe Tomato | 5.0702 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.48164 | 0.062 |
Ripe Pepper/Ripe Tomato | 2.51781 | 1 |
Mature Eggplant/Ripe Tomato | 9.75409 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99719 | 1 |
1-1-2/M82 | 1.22636 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.13922 | 1 |
1-3/M82 | 0.82435 | 0.441 |
2-1-1/M82 | 0.9416 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.1301 | 0.339 |
3-2/M82 | 0.83274 | |
4-1-1/M82 | 0.92762 | 1 |
4-1/M82 | 1.20548 | |
4-3-2/M82 | 1.2744 | |
4-3/M82 | 1.13771 | 1 |
5-3/M82 | 0.92962 | 1 |
6-2/M82 | 0.74555 | 0.481 |
6-3/M82 | 0.87424 | |
7-1/M82 | 0.9255 | |
7-2/M82 | 0.91289 | 0.796 |
9-3-2/M82 | 1.3139 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.72994 | 0.247 |
IL2-6/WTpooled | 1.16056 | 0.46 |
IL7-5/WTpooled | 1.10254 | 1 |
IL7-3/WTpooled | 0.58188 | 0.31 |
IL12-4/WTpooled | 1.00839 | 0.839 |
IL1-4/WTpooled | 1.06128 | 1 |
WT/WTpooled | 0.95978 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.88216 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0156 | 0.914 |
DC3000/delta hrp 6h | 0.96339 | 0.95 |
DC3000/delta hrp 12h | 0.97775 | 1 |
DC3000/delta hrp 24h | 0.45469 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.43498 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.45962 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.01808 | 1 |
Exp 36h | 0.7987 | 0.589 |
Exp 60h | 0.6982 | 0.251 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01612 | 1 |
Var 0h | 0.49329 | 1 |
Var 12h I row2-row1 | 0.72671 | 0.338 |
Var 12h NI row2-row1 | 1.03886 | 1 |
Var 36h I row2-row1 | 0.95153 | 0.805 |
Var 36h NI row2-row1 | 1.17132 | 0.482 |
Var 60h I row2-row1 | 1.01788 | 1 |
Var 60h NI row2-row1 | 1.03803 | 1 |
Time course 0hI-0hNI | 0.99786 | 1 |
Time course 12hI-12hNI | 1.00214 | 1 |
Time course 36hI-36hNI | 0.8473 | 0.031 |
Time course 60hI-60hNI | 0.15409 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.84958 | 0.299 |
transgenic ySAMdc/azygous control (breaker) | 1.10035 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.1344 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96567 | 0.122 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.16893 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.14699 | 0.088 |
Manapal/WT (break) | 2.53014 | 0.13 |
Manapal/WT (red) | 1.74487 | 0.142 |
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