Expression of 1-1-5.2.1.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.629650.04
27DAP/17DAP0.935690.879
39DAP/27DAP2.60190.025
41DAP/39DAP0.978510.845
42DAP/41DAP0.889031
43DAP/42DAP1.030390.945
47DAP/43DAP0.5310.051
52DAP/47DAP2.893770.119
57DAP/52DAP0.787570.768

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.339380.065
17DAP/reference0.828520.015
27DAP/reference0.812470.07
39DAP/reference0.928720.234
41DAP/reference0.906290.267
42DAP/reference1.284710.001
43DAP/reference1.058450.36
47DAP/reference1.462380.001
52DAP/reference1.061780.663
57DAP/reference1.118050.141

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.459660.024
27DAP/17DAP1.243560.116
39DAP/27DAP1.051240.779
41DAP/39DAP0.954190.893
42DAP/41DAP1.094190.495
43DAP/42DAP1.52990.015
47DAP/43DAP1.038550.844
52DAP/47DAP0.660110.134
57DAP/52DAP1.406520.081
57DAP/7DAP0.81261

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.263190.057
17DAP/reference1.093710.147
27DAP/reference1.502220.008
39DAP/reference1.185770.018
41DAP/reference1.573490.012
42DAP/reference1.529160.008
43DAP/reference2.146510.006
47DAP/reference1.240020.106
52DAP/reference1.414280.055
57DAP/reference0.967850.426

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.341560.079
17DAP/reference1.151140.571
27DAP/reference1.828930.017
39DAP/reference1.540110.015
41DAP/reference1.694680.005
42DAP/reference1.597190.008
43DAP/reference1.344850.023
47DAP/reference1.253640.092
52DAP/reference1.007981
57DAP/reference0.754040.03

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.408560.057
17DAP/reference1.150060.365
27DAP/reference1.460670.018
39DAP/reference1.289430.011
41DAP/reference1.351540.038
42DAP/reference1.694490.007
43DAP/reference1.753130.026
47DAP/reference1.105180.355
52DAP/reference1.576960.033
57DAP/reference1.556210.034

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.941651
26DAP/20DAP0.850141
34DAP/26DAP0.587020.076
51DAP/34DAP0.682720.101
52DAP/51DAP0.800561
53DAP/52DAP2.217290.032
55DAP/53DAP1.213180.689
57DAP/55DAP0.624880.03
62DAP/57DAP0.409420.001
68DAP/62DAP1.486220.5
68DAP/14DAP1.070981

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.142460.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.199070.058
Mature Green Tomato/Ripe Tomato0.285590.014
Immature Eggplant/Mature Eggplant2.175980.05
Ripe Pepper/Ripe Tomato0.554450.224
Mature Eggplant/Ripe Tomato0.386440.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.489340.591
1-1-2/M821.273811
12-2/M820.961280.955
12-4/M821.251311
1-3/M821.654041
2-1-1/M820.975461
2-1/M820.890830.74
2-6/M820.986441
3-2/M821.113070.967
4-1-1/M820.990561
4-1/M821.54621
4-3-2/M821.848810.284
4-3/M821.362080.268
5-3/M821.227060.496
6-2/M822.353580.198
6-3/M820.991291
7-1/M821.167381
7-2/M821.095090.318
9-3-2/M821.248241

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.424970.365
IL2-6/WTpooled1.015751
IL7-5/WTpooled0.71573
IL7-3/WTpooled1.049321
IL12-4/WTpooled0.982921
IL1-4/WTpooled1.035851
WT/WTpooled1.058741

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.049250.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.065680.894
DC3000/delta hrp 6h1.058760.978
DC3000/delta hrp 12h0.976661
DC3000/delta hrp 24h2.195190.029

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.344210.042
DC3000 delta B/DC3000 delta AB1.062330.544

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.016141
Exp 36h0.884120.661
Exp 60h0.909170.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987151
Var 0h0.488151
Var 12h I row2-row10.802760.363
Var 12h NI row2-row11.167360.649
Var 36h I row2-row11.065751
Var 36h NI row2-row10.83270.522
Var 60h I row2-row10.800220.439
Var 60h NI row2-row10.846120.818
Time course 0hI-0hNI0.967270.849
Time course 12hI-12hNI0.94030.41
Time course 36hI-36hNI1.173010.017
Time course 60hI-60hNI1.433470.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.284060.36
transgenic ySAMdc/azygous control (breaker)0.453130.137
transgenic ySAMdc/azygous control (red)1.053960.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.016510.909

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.659340.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.671911
Manapal/WT (break)0.755420.299
Manapal/WT (red)0.635140.181