Expression of 1-1-5.2.1.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.27010.786
27DAP/17DAP0.925960.787
39DAP/27DAP1.16240.733
41DAP/39DAP0.885880.506
42DAP/41DAP2.660660.752
43DAP/42DAP1.099651
47DAP/43DAP1.176890.965
52DAP/47DAP1.086240.842
57DAP/52DAP1.401290.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.867820.03
17DAP/reference2.061720.585
27DAP/reference0.68041
39DAP/referenceN/AN/A
41DAP/reference1.35710.338
42DAP/reference1.208190.609
43DAP/reference0.992280.904
47DAP/reference0.75751
52DAP/reference0.783270.202
57DAP/reference1.020750.767

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.035171
27DAP/17DAP0.911750.854
39DAP/27DAP1.486740.422
41DAP/39DAP0.670850.398
42DAP/41DAP1.436510.582
43DAP/42DAP1.004861
47DAP/43DAP1.030320.846
52DAP/47DAP1.362230.649
57DAP/52DAP1.962730.192
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.896840.183
17DAP/reference0.877950.144
27DAP/reference0.862510.03
39DAP/reference0.946130.198
41DAP/reference0.881880.203
42DAP/reference0.88280.106
43DAP/reference0.79790.031
47DAP/reference0.658730.128
52DAP/reference0.818350.024
57DAP/reference0.982320.477

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.965260.848
17DAP/referenceN/AN/A
27DAP/reference0.81495
39DAP/reference1.75832
41DAP/referenceN/AN/A
42DAP/reference0.92595
43DAP/reference1.127070.411
47DAP/reference1.517040.282
52DAP/reference0.41369
57DAP/reference0.968320.649

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.905050.29
17DAP/reference1.017640.966
27DAP/reference0.750050.036
39DAP/reference0.773040.017
41DAP/reference0.851280.209
42DAP/reference0.798730.049
43DAP/reference0.931850.237
47DAP/reference1.39911
52DAP/reference0.749230.082
57DAP/reference1.560310.378

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.775571
26DAP/20DAPN/AN/A
34DAP/26DAP1.02978
51DAP/34DAP1.16002
52DAP/51DAP1.19420.954
53DAP/52DAP0.84437
55DAP/53DAP0.789650.037
57DAP/55DAPN/AN/A
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAP1.06814

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.569240.186

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.217840.277
IL2-6/WTpooled1.01061
IL7-5/WTpooled0.713670.559
IL7-3/WTpooled0.878371
IL12-4/WTpooled0.779590.581
IL1-4/WTpooled0.934160.699
WT/WTpooled0.985811

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.3991
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.108531
Manapal/WT (red)N/AN/A