Expression of 1-1-5.2.1.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2701 | 0.786 |
27DAP/17DAP | 0.92596 | 0.787 |
39DAP/27DAP | 1.1624 | 0.733 |
41DAP/39DAP | 0.88588 | 0.506 |
42DAP/41DAP | 2.66066 | 0.752 |
43DAP/42DAP | 1.09965 | 1 |
47DAP/43DAP | 1.17689 | 0.965 |
52DAP/47DAP | 1.08624 | 0.842 |
57DAP/52DAP | 1.40129 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86782 | 0.03 |
17DAP/reference | 2.06172 | 0.585 |
27DAP/reference | 0.68041 | |
39DAP/reference | N/A | N/A |
41DAP/reference | 1.3571 | 0.338 |
42DAP/reference | 1.20819 | 0.609 |
43DAP/reference | 0.99228 | 0.904 |
47DAP/reference | 0.75751 | |
52DAP/reference | 0.78327 | 0.202 |
57DAP/reference | 1.02075 | 0.767 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03517 | 1 |
27DAP/17DAP | 0.91175 | 0.854 |
39DAP/27DAP | 1.48674 | 0.422 |
41DAP/39DAP | 0.67085 | 0.398 |
42DAP/41DAP | 1.43651 | 0.582 |
43DAP/42DAP | 1.00486 | 1 |
47DAP/43DAP | 1.03032 | 0.846 |
52DAP/47DAP | 1.36223 | 0.649 |
57DAP/52DAP | 1.96273 | 0.192 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89684 | 0.183 |
17DAP/reference | 0.87795 | 0.144 |
27DAP/reference | 0.86251 | 0.03 |
39DAP/reference | 0.94613 | 0.198 |
41DAP/reference | 0.88188 | 0.203 |
42DAP/reference | 0.8828 | 0.106 |
43DAP/reference | 0.7979 | 0.031 |
47DAP/reference | 0.65873 | 0.128 |
52DAP/reference | 0.81835 | 0.024 |
57DAP/reference | 0.98232 | 0.477 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96526 | 0.848 |
17DAP/reference | N/A | N/A |
27DAP/reference | 0.81495 | |
39DAP/reference | 1.75832 | |
41DAP/reference | N/A | N/A |
42DAP/reference | 0.92595 | |
43DAP/reference | 1.12707 | 0.411 |
47DAP/reference | 1.51704 | 0.282 |
52DAP/reference | 0.41369 | |
57DAP/reference | 0.96832 | 0.649 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90505 | 0.29 |
17DAP/reference | 1.01764 | 0.966 |
27DAP/reference | 0.75005 | 0.036 |
39DAP/reference | 0.77304 | 0.017 |
41DAP/reference | 0.85128 | 0.209 |
42DAP/reference | 0.79873 | 0.049 |
43DAP/reference | 0.93185 | 0.237 |
47DAP/reference | 1.39911 | |
52DAP/reference | 0.74923 | 0.082 |
57DAP/reference | 1.56031 | 0.378 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.77557 | 1 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.02978 | |
51DAP/34DAP | 1.16002 | |
52DAP/51DAP | 1.1942 | 0.954 |
53DAP/52DAP | 0.84437 | |
55DAP/53DAP | 0.78965 | 0.037 |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 1.06814 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.56924 | 0.186 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.21784 | 0.277 |
IL2-6/WTpooled | 1.0106 | 1 |
IL7-5/WTpooled | 0.71367 | 0.559 |
IL7-3/WTpooled | 0.87837 | 1 |
IL12-4/WTpooled | 0.77959 | 0.581 |
IL1-4/WTpooled | 0.93416 | 0.699 |
WT/WTpooled | 0.98581 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.3991 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.10853 | 1 |
Manapal/WT (red) | N/A | N/A |
|
|