Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.2.1.5

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	2.6714	0.656
27DAP/17DAP	0.51738	0.207
39DAP/27DAP	1.83802	0.463
41DAP/39DAP	0.96119	0.857
42DAP/41DAP	1.62704	0.82
43DAP/42DAP	0.73571	0.713
47DAP/43DAP	1.64113	0.42
52DAP/47DAP	1.29305	0.444
57DAP/52DAP	1.41985	0.82

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.43573
17DAP/reference	N/A	N/A
27DAP/reference	0.60149	0.223
39DAP/reference	1.44489	0.021
41DAP/reference	0.3691
42DAP/reference	0.78223	0.337
43DAP/reference	0.80648
47DAP/reference	0.86326	0.345
52DAP/reference	0.5799
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.67478
27DAP/17DAP	N/A	N/A
39DAP/27DAP	0.81847	0.556
41DAP/39DAP	0.6766	0.025
42DAP/41DAP	1.31581	0.861
43DAP/42DAP	0.53711
47DAP/43DAP	1.66812	0.601
52DAP/47DAP	2.46069	0.072
57DAP/52DAP	0.78539	0.467
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.81333	0.203
17DAP/reference	0.75426	0.011
27DAP/reference	0.78522	0.01
39DAP/reference	0.86059	0.021
41DAP/reference	0.87226	0.166
42DAP/reference	0.96265	0.436
43DAP/reference	0.79579	0.105
47DAP/reference	1.03536	1
52DAP/reference	1.07908	1
57DAP/reference	0.97821	0.494

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.77225	0.064
17DAP/reference	0.456	0.337
27DAP/reference	1.19532	1
39DAP/reference	N/A	N/A
41DAP/reference	N/A	N/A
42DAP/reference	6.33944
43DAP/reference	1.07699	0.489
47DAP/reference	2.60259
52DAP/reference	2.26587	0.789
57DAP/reference	1.12122

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98476	0.566
17DAP/reference	0.98746	0.792
27DAP/reference	0.83758	0.076
39DAP/reference	0.72998	0.04
41DAP/reference	0.8819	0.209
42DAP/reference	0.70655	0.087
43DAP/reference	0.97468	0.639
47DAP/reference	N/A	N/A
52DAP/reference	0.91977	0.444
57DAP/reference	0.86512

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	2.24746	0.916
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.66421
51DAP/34DAP	0.61591	0.077
52DAP/51DAP	1.22303
53DAP/52DAP	1.85628	0.502
55DAP/53DAP	1.38254	0.696
57DAP/55DAP	2.22789	0.818
62DAP/57DAP	0.28126
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	5.37256	0.391

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.17053	0.493
IL2-6/WTpooled	1.42351
IL7-5/WTpooled	0.89172	1
IL7-3/WTpooled	0.82894	0.294
IL12-4/WTpooled	0.92494	0.71
IL1-4/WTpooled	1.02252	1
WT/WTpooled	1.10819	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A