Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.2.1.6

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.98341	0.219
27DAP/17DAP	1.89084	0.947
39DAP/27DAP	0.68217	0.507
41DAP/39DAP	1.67464	0.72
42DAP/41DAP	0.87687	1
43DAP/42DAP	1.71913	0.985
47DAP/43DAP	0.75245	0.25
52DAP/47DAP	1.32368	0.521
57DAP/52DAP	0.97623	0.94

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.52196
17DAP/reference	0.70943	0.026
27DAP/reference	1.32149	0.58
39DAP/reference	0.61356
41DAP/reference	0.59659	0.026
42DAP/reference	1.44214	0.166
43DAP/reference	0.41349
47DAP/reference	1.16465	1
52DAP/reference	1.05076	0.695
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	N/A	N/A
27DAP/17DAP	0.55052
39DAP/27DAP	1.2638	0.793
41DAP/39DAP	0.84368	0.849
42DAP/41DAP	1.72469	0.824
43DAP/42DAP	0.98445	0.902
47DAP/43DAP	N/A	N/A
52DAP/47DAP	1.10306	0.868
57DAP/52DAP	0.39092
57DAP/7DAP	0.53383	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.89786	0.058
17DAP/reference	0.90667	0.012
27DAP/reference	0.89587	0.01
39DAP/reference	0.9662	0.198
41DAP/reference	0.95846	0.054
42DAP/reference	0.97386	0.106
43DAP/reference	0.96553	0.061
47DAP/reference	0.97243	1
52DAP/reference	0.95193	0.046
57DAP/reference	0.92031	0.025

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.88855	0.503
17DAP/reference	1.90697	0.017
27DAP/reference	1.64519
39DAP/reference	0.91425	0.274
41DAP/reference	1.3277	0.293
42DAP/reference	N/A	N/A
43DAP/reference	0.99136	0.774
47DAP/reference	0.9666
52DAP/reference	0.65428	0.004
57DAP/reference	1.47038	0.93

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.88135	0.03
17DAP/reference	1.10092	0.706
27DAP/reference	1.04631	0.903
39DAP/reference	0.98828	0.693
41DAP/reference	0.96673	0.148
42DAP/reference	0.97842	0.671
43DAP/reference	0.97483	0.348
47DAP/reference	1.26608	0.585
52DAP/reference	0.86815	0.164
57DAP/reference	1.31812	0.311

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	N/A	N/A
26DAP/20DAP	2.36586
34DAP/26DAP	1.10404
51DAP/34DAP	0.48204	0.049
52DAP/51DAP	1.15381	0.939
53DAP/52DAP	2.57596
55DAP/53DAP	2.06224
57DAP/55DAP	0.86956
62DAP/57DAP	0.82082
68DAP/62DAP	1.52349	0.029
68DAP/14DAP	1.09801

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.40395	0.326

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	4.40113
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	1.04571	0.788
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.89652	1
IL12-4/WTpooled	0.88845	0.581
IL1-4/WTpooled	1.01541	1
WT/WTpooled	0.98512	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A