Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.2.1.7

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	2.35223	1
27DAP/17DAP	0.98539	0.784
39DAP/27DAP	1.58349	0.105
41DAP/39DAP	0.73228	0.267
42DAP/41DAP	1.40054	0.913
43DAP/42DAP	1.11176	0.937
47DAP/43DAP	1.66302	0.926
52DAP/47DAP	1.10233	0.774
57DAP/52DAP	1.36683	0.96

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	N/A	N/A
27DAP/reference	1.492
39DAP/reference	N/A	N/A
41DAP/reference	1.39245	0.48
42DAP/reference	1.20315	0.366
43DAP/reference	0.69009	0.2
47DAP/reference	0.9758	0.568
52DAP/reference	0.53381
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.40853	0.812
27DAP/17DAP	1.47165	0.423
39DAP/27DAP	1.57266
41DAP/39DAP	N/A	N/A
42DAP/41DAP	2.56058	0.04
43DAP/42DAP	1.32629	0.788
47DAP/43DAP	1.93055	0.475
52DAP/47DAP	1.05928	0.951
57DAP/52DAP	0.72555
57DAP/7DAP	1.03503

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	3.96106	0.024
17DAP/reference	1.56634	0.017
27DAP/reference	2.6472	0.006
39DAP/reference	1.91602	0.009
41DAP/reference	2.07793	0.008
42DAP/reference	2.17498	0.021
43DAP/reference	2.37845	0.01
47DAP/reference	4.08963	0.014
52DAP/reference	14.547	0.007
57DAP/reference	11.7389	0.004

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.10353	0.802
17DAP/reference	1.0362	0.642
27DAP/reference	1.06446
39DAP/reference	1.41695	0.602
41DAP/reference	1.26312	1
42DAP/reference	0.74099
43DAP/reference	0.40346	0.002
47DAP/reference	N/A	N/A
52DAP/reference	N/A	N/A
57DAP/reference	0.66063	0.46

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	5.95587	0.015
17DAP/reference	0.90121	0.358
27DAP/reference	1.47873	0.057
39DAP/reference	5.04492	0.009
41DAP/reference	4.67489	0.006
42DAP/reference	3.32629	0.007
43DAP/reference	2.61364	0.008
47DAP/reference	0.43601
52DAP/reference	2.50221	0.289
57DAP/reference	2.76503	0.098

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.09131	1
26DAP/20DAP	1.01718	1
34DAP/26DAP	0.87325	0.675
51DAP/34DAP	0.94869
52DAP/51DAP	1.78012	0.034
53DAP/52DAP	1.00481	0.96
55DAP/53DAP	1.56121	0.049
57DAP/55DAP	0.45492
62DAP/57DAP	0.54475
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.73271	0.186

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.53305	0.243
IL2-6/WTpooled	1.24589	0.427
IL7-5/WTpooled	0.44129	0.559
IL7-3/WTpooled	0.58034	0.31
IL12-4/WTpooled	0.90804	1
IL1-4/WTpooled	0.91799	0.834
WT/WTpooled	0.89707	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A