Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.2.1.9

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.05628	0.664
27DAP/17DAP	1.01692	1
39DAP/27DAP	1.02258	1
41DAP/39DAP	1.21259	0.929
42DAP/41DAP	1.55924	0.967
43DAP/42DAP	1.22074	0.968
47DAP/43DAP	1.27307	0.727
52DAP/47DAP	1.47087	0.798
57DAP/52DAP	3.01134	0.972

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.77956	0.194
17DAP/reference	N/A	N/A
27DAP/reference	0.85682
39DAP/reference	0.65154
41DAP/reference	N/A	N/A
42DAP/reference	1.02755	0.484
43DAP/reference	0.75067	0.287
47DAP/reference	1.42429	0.233
52DAP/reference	1.02848	0.58
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.9767	0.732
27DAP/17DAP	1.57362	0.872
39DAP/27DAP	0.90251	0.563
41DAP/39DAP	1.86678
42DAP/41DAP	1.16117	0.984
43DAP/42DAP	N/A	N/A
47DAP/43DAP	0.96037	0.857
52DAP/47DAP	3.27905	0.072
57DAP/52DAP	0.83111	0.434
57DAP/7DAP	2.37707

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.92358	0.445
17DAP/reference	0.98147	0.447
27DAP/reference	0.9315	0.215
39DAP/reference	0.65108	0.043
41DAP/reference	0.89413	0.284
42DAP/reference	0.70087	0.023
43DAP/reference	0.92308	0.252
47DAP/reference	0.61526	0.038
52DAP/reference	0.9628	0.398
57DAP/reference	0.86427	0.08

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.09235	0.863
17DAP/reference	2.11747	0.05
27DAP/reference	1.48194	0.31
39DAP/reference	0.95201	0.526
41DAP/reference	1.46669	0.041
42DAP/reference	N/A	N/A
43DAP/reference	1.03575	0.787
47DAP/reference	1.02726	1
52DAP/reference	1.48102	0.208
57DAP/reference	1.09463	0.538

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.92769	0.335
17DAP/reference	0.97185	0.668
27DAP/reference	0.93927	0.442
39DAP/reference	1.16365	0.218
41DAP/reference	0.98855	0.754
42DAP/reference	0.93024	0.552
43DAP/reference	0.84058	0.143
47DAP/reference	0.88363	0.509
52DAP/reference	0.83956	0.18
57DAP/reference	0.0871

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.11791	1
26DAP/20DAP	2.79975	0.099
34DAP/26DAP	0.9051	0.961
51DAP/34DAP	1.46171	0.719
52DAP/51DAP	1.39465	0.065
53DAP/52DAP	0.24893
55DAP/53DAP	1.71432	0.22
57DAP/55DAP	0.95834	0.859
62DAP/57DAP	1.13607
68DAP/62DAP	N/A	N/A
68DAP/14DAP	1.27982

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.85827	0.399

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.33529
IL2-6/WTpooled	0.66181	0.473
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	1.09803	0.362
IL12-4/WTpooled	0.96341	1
IL1-4/WTpooled	1.02958	1
WT/WTpooled	1.05625	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A