Expression of 1-1-5.2.1.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05628 | 0.664 |
27DAP/17DAP | 1.01692 | 1 |
39DAP/27DAP | 1.02258 | 1 |
41DAP/39DAP | 1.21259 | 0.929 |
42DAP/41DAP | 1.55924 | 0.967 |
43DAP/42DAP | 1.22074 | 0.968 |
47DAP/43DAP | 1.27307 | 0.727 |
52DAP/47DAP | 1.47087 | 0.798 |
57DAP/52DAP | 3.01134 | 0.972 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77956 | 0.194 |
17DAP/reference | N/A | N/A |
27DAP/reference | 0.85682 | |
39DAP/reference | 0.65154 | |
41DAP/reference | N/A | N/A |
42DAP/reference | 1.02755 | 0.484 |
43DAP/reference | 0.75067 | 0.287 |
47DAP/reference | 1.42429 | 0.233 |
52DAP/reference | 1.02848 | 0.58 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9767 | 0.732 |
27DAP/17DAP | 1.57362 | 0.872 |
39DAP/27DAP | 0.90251 | 0.563 |
41DAP/39DAP | 1.86678 | |
42DAP/41DAP | 1.16117 | 0.984 |
43DAP/42DAP | N/A | N/A |
47DAP/43DAP | 0.96037 | 0.857 |
52DAP/47DAP | 3.27905 | 0.072 |
57DAP/52DAP | 0.83111 | 0.434 |
57DAP/7DAP | 2.37707 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92358 | 0.445 |
17DAP/reference | 0.98147 | 0.447 |
27DAP/reference | 0.9315 | 0.215 |
39DAP/reference | 0.65108 | 0.043 |
41DAP/reference | 0.89413 | 0.284 |
42DAP/reference | 0.70087 | 0.023 |
43DAP/reference | 0.92308 | 0.252 |
47DAP/reference | 0.61526 | 0.038 |
52DAP/reference | 0.9628 | 0.398 |
57DAP/reference | 0.86427 | 0.08 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09235 | 0.863 |
17DAP/reference | 2.11747 | 0.05 |
27DAP/reference | 1.48194 | 0.31 |
39DAP/reference | 0.95201 | 0.526 |
41DAP/reference | 1.46669 | 0.041 |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.03575 | 0.787 |
47DAP/reference | 1.02726 | 1 |
52DAP/reference | 1.48102 | 0.208 |
57DAP/reference | 1.09463 | 0.538 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92769 | 0.335 |
17DAP/reference | 0.97185 | 0.668 |
27DAP/reference | 0.93927 | 0.442 |
39DAP/reference | 1.16365 | 0.218 |
41DAP/reference | 0.98855 | 0.754 |
42DAP/reference | 0.93024 | 0.552 |
43DAP/reference | 0.84058 | 0.143 |
47DAP/reference | 0.88363 | 0.509 |
52DAP/reference | 0.83956 | 0.18 |
57DAP/reference | 0.0871 | |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11791 | 1 |
26DAP/20DAP | 2.79975 | 0.099 |
34DAP/26DAP | 0.9051 | 0.961 |
51DAP/34DAP | 1.46171 | 0.719 |
52DAP/51DAP | 1.39465 | 0.065 |
53DAP/52DAP | 0.24893 | |
55DAP/53DAP | 1.71432 | 0.22 |
57DAP/55DAP | 0.95834 | 0.859 |
62DAP/57DAP | 1.13607 | |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 1.27982 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85827 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.33529 | |
IL2-6/WTpooled | 0.66181 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.09803 | 0.362 |
IL12-4/WTpooled | 0.96341 | 1 |
IL1-4/WTpooled | 1.02958 | 1 |
WT/WTpooled | 1.05625 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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