Expression of 1-1-5.2.10.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.925480.568
27DAP/17DAP0.77120.199
39DAP/27DAP0.911060.62
41DAP/39DAP1.116710.575
42DAP/41DAP0.902331
43DAP/42DAP1.005650.937
47DAP/43DAP1.219520.842
52DAP/47DAP1.57180.46
57DAP/52DAP1.061450.995

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.895610.224
17DAP/reference0.655690.009
27DAP/reference0.711590.048
39DAP/reference0.550780.01
41DAP/reference0.548650.013
42DAP/reference0.990560.484
43DAP/reference0.692850.017
47DAP/reference0.827870.032
52DAP/reference0.666240.017
57DAP/reference0.827690.068

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.010470.782
27DAP/17DAP1.123630.811
39DAP/27DAP0.65560.044
41DAP/39DAP1.063931
42DAP/41DAP1.148070.8
43DAP/42DAP1.171120.176
47DAP/43DAP0.959070.846
52DAP/47DAP0.974540.917
57DAP/52DAP0.771950.047
57DAP/7DAP0.586641

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.868820.129
17DAP/reference1.069690.822
27DAP/reference1.189150.06
39DAP/reference0.865440.126
41DAP/reference1.147160.593
42DAP/reference1.084930.308
43DAP/reference1.0730.637
47DAP/reference0.776290.04
52DAP/reference0.902740.278
57DAP/reference0.993130.648

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.643480.007
17DAP/reference0.551420.003
27DAP/reference0.768710.033
39DAP/reference0.798090.029
41DAP/reference0.760950.024
42DAP/reference0.783380.015
43DAP/reference0.629360.022
47DAP/reference0.759970.018
52DAP/reference0.45350.004
57DAP/reference0.414430.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.132590.224
17DAP/reference0.992590.778
27DAP/reference1.102750.312
39DAP/reference0.945190.464
41DAP/reference0.876490.185
42DAP/reference1.005051
43DAP/reference0.871840.158
47DAP/reference0.818840.054
52DAP/reference1.069220.813
57DAP/reference1.132750.255

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.16311
26DAP/20DAP1.502970.315
34DAP/26DAP1.251991
51DAP/34DAP0.850170.537
52DAP/51DAP1.604390.035
53DAP/52DAP0.846140.329
55DAP/53DAP1.657160.031
57DAP/55DAP0.764310.225
62DAP/57DAP1.383820.445
68DAP/62DAP2.635130.017
68DAP/14DAP6.47210.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.290080.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.902270.611
Immature Eggplant/Mature Eggplant2.835980.06
Ripe Pepper/Ripe Tomato0.4647
Mature Eggplant/Ripe Tomato0.970231

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.998521
1-1-2/M820.845560.958
12-2/M821.35638
12-4/M820.662270.257
1-3/M820.86398
2-1-1/M820.732640.465
2-1/M821.083531
2-6/M821.091920.695
3-2/M820.64337
4-1-1/M820.97832
4-1/M821.03755
4-3-2/M820.868671
4-3/M821.004241
5-3/M821.059221
6-2/M82N/AN/A
6-3/M821.00685
7-1/M820.82668
7-2/M821.136431
9-3-2/M821.088621

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.160530.441
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.034241
IL12-4/WTpooled1.000431
IL1-4/WTpooled1.069231
WT/WTpooled0.948831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.895740.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.881210.849
DC3000/delta hrp 6h0.932040.95
DC3000/delta hrp 12h0.881291
DC3000/delta hrp 24h0.881290.292

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.96270.955
DC3000 delta B/DC3000 delta AB0.98530.849

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.01251
Exp 36h2.42951
Exp 60h1.391361

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025231
Var 0h1.32340.98
Var 12h I row2-row10.93970.77
Var 12h NI row2-row11.152410.649
Var 36h I row2-row11.237530.489
Var 36h NI row2-row11.005931
Var 60h I row2-row10.924620.952
Var 60h NI row2-row10.923120.977
Time course 0hI-0hNI0.882080.11
Time course 12hI-12hNI0.948140.746
Time course 36hI-36hNI0.955990.396
Time course 60hI-60hNI0.803570.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)2.412050.228
transgenic ySAMdc/azygous control (breaker)0.195270.142
transgenic ySAMdc/azygous control (red)1.346890.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.965850.486

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt4.233580.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.996371
Manapal/WT (break)10.7740.183
Manapal/WT (red)2.527870.222