Expression of 1-1-5.2.10.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92548 | 0.568 |
27DAP/17DAP | 0.7712 | 0.199 |
39DAP/27DAP | 0.91106 | 0.62 |
41DAP/39DAP | 1.11671 | 0.575 |
42DAP/41DAP | 0.90233 | 1 |
43DAP/42DAP | 1.00565 | 0.937 |
47DAP/43DAP | 1.21952 | 0.842 |
52DAP/47DAP | 1.5718 | 0.46 |
57DAP/52DAP | 1.06145 | 0.995 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89561 | 0.224 |
17DAP/reference | 0.65569 | 0.009 |
27DAP/reference | 0.71159 | 0.048 |
39DAP/reference | 0.55078 | 0.01 |
41DAP/reference | 0.54865 | 0.013 |
42DAP/reference | 0.99056 | 0.484 |
43DAP/reference | 0.69285 | 0.017 |
47DAP/reference | 0.82787 | 0.032 |
52DAP/reference | 0.66624 | 0.017 |
57DAP/reference | 0.82769 | 0.068 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01047 | 0.782 |
27DAP/17DAP | 1.12363 | 0.811 |
39DAP/27DAP | 0.6556 | 0.044 |
41DAP/39DAP | 1.06393 | 1 |
42DAP/41DAP | 1.14807 | 0.8 |
43DAP/42DAP | 1.17112 | 0.176 |
47DAP/43DAP | 0.95907 | 0.846 |
52DAP/47DAP | 0.97454 | 0.917 |
57DAP/52DAP | 0.77195 | 0.047 |
57DAP/7DAP | 0.58664 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86882 | 0.129 |
17DAP/reference | 1.06969 | 0.822 |
27DAP/reference | 1.18915 | 0.06 |
39DAP/reference | 0.86544 | 0.126 |
41DAP/reference | 1.14716 | 0.593 |
42DAP/reference | 1.08493 | 0.308 |
43DAP/reference | 1.073 | 0.637 |
47DAP/reference | 0.77629 | 0.04 |
52DAP/reference | 0.90274 | 0.278 |
57DAP/reference | 0.99313 | 0.648 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.64348 | 0.007 |
17DAP/reference | 0.55142 | 0.003 |
27DAP/reference | 0.76871 | 0.033 |
39DAP/reference | 0.79809 | 0.029 |
41DAP/reference | 0.76095 | 0.024 |
42DAP/reference | 0.78338 | 0.015 |
43DAP/reference | 0.62936 | 0.022 |
47DAP/reference | 0.75997 | 0.018 |
52DAP/reference | 0.4535 | 0.004 |
57DAP/reference | 0.41443 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13259 | 0.224 |
17DAP/reference | 0.99259 | 0.778 |
27DAP/reference | 1.10275 | 0.312 |
39DAP/reference | 0.94519 | 0.464 |
41DAP/reference | 0.87649 | 0.185 |
42DAP/reference | 1.00505 | 1 |
43DAP/reference | 0.87184 | 0.158 |
47DAP/reference | 0.81884 | 0.054 |
52DAP/reference | 1.06922 | 0.813 |
57DAP/reference | 1.13275 | 0.255 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1631 | 1 |
26DAP/20DAP | 1.50297 | 0.315 |
34DAP/26DAP | 1.25199 | 1 |
51DAP/34DAP | 0.85017 | 0.537 |
52DAP/51DAP | 1.60439 | 0.035 |
53DAP/52DAP | 0.84614 | 0.329 |
55DAP/53DAP | 1.65716 | 0.031 |
57DAP/55DAP | 0.76431 | 0.225 |
62DAP/57DAP | 1.38382 | 0.445 |
68DAP/62DAP | 2.63513 | 0.017 |
68DAP/14DAP | 6.4721 | 0.022 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.29008 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.90227 | 0.611 |
Immature Eggplant/Mature Eggplant | 2.83598 | 0.06 |
Ripe Pepper/Ripe Tomato | 0.4647 | |
Mature Eggplant/Ripe Tomato | 0.97023 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99852 | 1 |
1-1-2/M82 | 0.84556 | 0.958 |
12-2/M82 | 1.35638 | |
12-4/M82 | 0.66227 | 0.257 |
1-3/M82 | 0.86398 | |
2-1-1/M82 | 0.73264 | 0.465 |
2-1/M82 | 1.08353 | 1 |
2-6/M82 | 1.09192 | 0.695 |
3-2/M82 | 0.64337 | |
4-1-1/M82 | 0.97832 | |
4-1/M82 | 1.03755 | |
4-3-2/M82 | 0.86867 | 1 |
4-3/M82 | 1.00424 | 1 |
5-3/M82 | 1.05922 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.00685 | |
7-1/M82 | 0.82668 | |
7-2/M82 | 1.13643 | 1 |
9-3-2/M82 | 1.08862 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.16053 | 0.441 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.03424 | 1 |
IL12-4/WTpooled | 1.00043 | 1 |
IL1-4/WTpooled | 1.06923 | 1 |
WT/WTpooled | 0.94883 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.89574 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.88121 | 0.849 |
DC3000/delta hrp 6h | 0.93204 | 0.95 |
DC3000/delta hrp 12h | 0.88129 | 1 |
DC3000/delta hrp 24h | 0.88129 | 0.292 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.9627 | 0.955 |
DC3000 delta B/DC3000 delta AB | 0.9853 | 0.849 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0125 | 1 |
Exp 36h | 2.4295 | 1 |
Exp 60h | 1.39136 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02523 | 1 |
Var 0h | 1.3234 | 0.98 |
Var 12h I row2-row1 | 0.9397 | 0.77 |
Var 12h NI row2-row1 | 1.15241 | 0.649 |
Var 36h I row2-row1 | 1.23753 | 0.489 |
Var 36h NI row2-row1 | 1.00593 | 1 |
Var 60h I row2-row1 | 0.92462 | 0.952 |
Var 60h NI row2-row1 | 0.92312 | 0.977 |
Time course 0hI-0hNI | 0.88208 | 0.11 |
Time course 12hI-12hNI | 0.94814 | 0.746 |
Time course 36hI-36hNI | 0.95599 | 0.396 |
Time course 60hI-60hNI | 0.80357 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 2.41205 | 0.228 |
transgenic ySAMdc/azygous control (breaker) | 0.19527 | 0.142 |
transgenic ySAMdc/azygous control (red) | 1.34689 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96585 | 0.486 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 4.23358 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.99637 | 1 |
Manapal/WT (break) | 10.774 | 0.183 |
Manapal/WT (red) | 2.52787 | 0.222 |
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