Expression of 1-1-5.2.10.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.951910.671
27DAP/17DAP1.402240.587
39DAP/27DAP1.37250.44
41DAP/39DAP0.886830.54
42DAP/41DAP0.918981
43DAP/42DAP0.773170.671
47DAP/43DAP1.095050.647
52DAP/47DAP1.535430.371
57DAP/52DAP1.485160.837

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.979780.578
17DAP/reference0.942770.368
27DAP/reference1.040420.384
39DAP/reference0.993320.874
41DAP/reference0.894610.201
42DAP/reference0.956530.103
43DAP/reference0.981520.653
47DAP/reference0.999490.636
52DAP/reference0.972680.504
57DAP/reference0.969220.34

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.943220.56
27DAP/17DAP0.734330.206
39DAP/27DAP1.551480.053
41DAP/39DAP1.77580.207
42DAP/41DAP0.635520.021
43DAP/42DAP1.399340.015
47DAP/43DAP1.062450.681
52DAP/47DAP1.348420.412
57DAP/52DAP1.794490.029
57DAP/7DAP1.564510.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.392630.101
17DAP/reference1.436160.008
27DAP/reference1.237390.026
39DAP/reference1.413250.007
41DAP/reference1.151750.303
42DAP/reference1.204760.076
43DAP/reference1.41930.007
47DAP/reference1.257410.279
52DAP/reference1.408810.015
57DAP/reference1.296320.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.910180.329
17DAP/reference1.002960.747
27DAP/reference0.945130.327
39DAP/reference0.978120.497
41DAP/reference0.940970.242
42DAP/reference0.975060.433
43DAP/reference0.797820.077
47DAP/reference0.934420.178
52DAP/reference0.885670.027
57DAP/reference0.909320.116

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.234070.149
17DAP/reference1.11990.631
27DAP/reference1.535120.016
39DAP/reference1.425590.017
41DAP/reference1.250720.052
42DAP/reference1.337770.036
43DAP/reference1.434620.05
47DAP/reference0.918590.357
52DAP/reference1.232570.284
57DAP/reference1.415540.015

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.193140.966
26DAP/20DAP1.021661
34DAP/26DAP1.055351
51DAP/34DAP1.84980.032
52DAP/51DAP0.819920.151
53DAP/52DAP2.168590.026
55DAP/53DAP0.984040.886
57DAP/55DAP1.120120.87
62DAP/57DAP0.689940.028
68DAP/62DAP0.945230.769
68DAP/14DAP3.029740.024

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.440240.018

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.218270.06
Mature Green Tomato/Ripe Tomato0.515590.016
Immature Eggplant/Mature Eggplant0.813970.254
Ripe Pepper/Ripe Tomato3.951690.256
Mature Eggplant/Ripe Tomato0.55180.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.371680.742
1-1-2/M821.081111
12-2/M821.165041
12-4/M821.106491
1-3/M821.184390.248
2-1-1/M821.239371
2-1/M82N/AN/A
2-6/M821.752720.329
3-2/M820.981771
4-1-1/M821.401051
4-1/M821.028591
4-3-2/M821.987960.241
4-3/M822.212240.268
5-3/M820.762310.49
6-2/M820.77389
6-3/M821.08411
7-1/M821.032941
7-2/M821.081141
9-3-2/M821.409461

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.830460.294
IL12-4/WTpooled1.333670.737
IL1-4/WTpooled0.904910.699
WT/WTpooled0.982791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.167261

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.041620.724
DC3000/delta hrp 6h1.016421
DC3000/delta hrp 12h1.173451
DC3000/delta hrp 24h0.720650.05

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.240310.208
DC3000 delta B/DC3000 delta AB1.410340.117

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.898511
Exp 36h1.034621
Exp 60h0.983860.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.025411
Var 0h0.573960.782
Var 12h I row2-row11.006571
Var 12h NI row2-row11.108970.649
Var 36h I row2-row11.2280.601
Var 36h NI row2-row11.324240.482
Var 60h I row2-row10.989581
Var 60h NI row2-row11.201880.904
Time course 0hI-0hNI1.076270.799
Time course 12hI-12hNI1.151310.107
Time course 36hI-36hNI1.270270.039
Time course 60hI-60hNI1.247050.033

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.026350.863
transgenic ySAMdc/azygous control (breaker)0.86420.15
transgenic ySAMdc/azygous control (red)1.534410.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.390270.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.46730.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.965780.083
Manapal/WT (break)1.776350.183
Manapal/WT (red)1.429360.413