Expression of 1-1-5.2.10.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95191 | 0.671 |
27DAP/17DAP | 1.40224 | 0.587 |
39DAP/27DAP | 1.3725 | 0.44 |
41DAP/39DAP | 0.88683 | 0.54 |
42DAP/41DAP | 0.91898 | 1 |
43DAP/42DAP | 0.77317 | 0.671 |
47DAP/43DAP | 1.09505 | 0.647 |
52DAP/47DAP | 1.53543 | 0.371 |
57DAP/52DAP | 1.48516 | 0.837 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97978 | 0.578 |
17DAP/reference | 0.94277 | 0.368 |
27DAP/reference | 1.04042 | 0.384 |
39DAP/reference | 0.99332 | 0.874 |
41DAP/reference | 0.89461 | 0.201 |
42DAP/reference | 0.95653 | 0.103 |
43DAP/reference | 0.98152 | 0.653 |
47DAP/reference | 0.99949 | 0.636 |
52DAP/reference | 0.97268 | 0.504 |
57DAP/reference | 0.96922 | 0.34 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94322 | 0.56 |
27DAP/17DAP | 0.73433 | 0.206 |
39DAP/27DAP | 1.55148 | 0.053 |
41DAP/39DAP | 1.7758 | 0.207 |
42DAP/41DAP | 0.63552 | 0.021 |
43DAP/42DAP | 1.39934 | 0.015 |
47DAP/43DAP | 1.06245 | 0.681 |
52DAP/47DAP | 1.34842 | 0.412 |
57DAP/52DAP | 1.79449 | 0.029 |
57DAP/7DAP | 1.56451 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39263 | 0.101 |
17DAP/reference | 1.43616 | 0.008 |
27DAP/reference | 1.23739 | 0.026 |
39DAP/reference | 1.41325 | 0.007 |
41DAP/reference | 1.15175 | 0.303 |
42DAP/reference | 1.20476 | 0.076 |
43DAP/reference | 1.4193 | 0.007 |
47DAP/reference | 1.25741 | 0.279 |
52DAP/reference | 1.40881 | 0.015 |
57DAP/reference | 1.29632 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91018 | 0.329 |
17DAP/reference | 1.00296 | 0.747 |
27DAP/reference | 0.94513 | 0.327 |
39DAP/reference | 0.97812 | 0.497 |
41DAP/reference | 0.94097 | 0.242 |
42DAP/reference | 0.97506 | 0.433 |
43DAP/reference | 0.79782 | 0.077 |
47DAP/reference | 0.93442 | 0.178 |
52DAP/reference | 0.88567 | 0.027 |
57DAP/reference | 0.90932 | 0.116 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23407 | 0.149 |
17DAP/reference | 1.1199 | 0.631 |
27DAP/reference | 1.53512 | 0.016 |
39DAP/reference | 1.42559 | 0.017 |
41DAP/reference | 1.25072 | 0.052 |
42DAP/reference | 1.33777 | 0.036 |
43DAP/reference | 1.43462 | 0.05 |
47DAP/reference | 0.91859 | 0.357 |
52DAP/reference | 1.23257 | 0.284 |
57DAP/reference | 1.41554 | 0.015 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.19314 | 0.966 |
26DAP/20DAP | 1.02166 | 1 |
34DAP/26DAP | 1.05535 | 1 |
51DAP/34DAP | 1.8498 | 0.032 |
52DAP/51DAP | 0.81992 | 0.151 |
53DAP/52DAP | 2.16859 | 0.026 |
55DAP/53DAP | 0.98404 | 0.886 |
57DAP/55DAP | 1.12012 | 0.87 |
62DAP/57DAP | 0.68994 | 0.028 |
68DAP/62DAP | 0.94523 | 0.769 |
68DAP/14DAP | 3.02974 | 0.024 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.44024 | 0.018 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.21827 | 0.06 |
Mature Green Tomato/Ripe Tomato | 0.51559 | 0.016 |
Immature Eggplant/Mature Eggplant | 0.81397 | 0.254 |
Ripe Pepper/Ripe Tomato | 3.95169 | 0.256 |
Mature Eggplant/Ripe Tomato | 0.5518 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.37168 | 0.742 |
1-1-2/M82 | 1.08111 | 1 |
12-2/M82 | 1.16504 | 1 |
12-4/M82 | 1.10649 | 1 |
1-3/M82 | 1.18439 | 0.248 |
2-1-1/M82 | 1.23937 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.75272 | 0.329 |
3-2/M82 | 0.98177 | 1 |
4-1-1/M82 | 1.40105 | 1 |
4-1/M82 | 1.02859 | 1 |
4-3-2/M82 | 1.98796 | 0.241 |
4-3/M82 | 2.21224 | 0.268 |
5-3/M82 | 0.76231 | 0.49 |
6-2/M82 | 0.77389 | |
6-3/M82 | 1.0841 | 1 |
7-1/M82 | 1.03294 | 1 |
7-2/M82 | 1.08114 | 1 |
9-3-2/M82 | 1.40946 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.83046 | 0.294 |
IL12-4/WTpooled | 1.33367 | 0.737 |
IL1-4/WTpooled | 0.90491 | 0.699 |
WT/WTpooled | 0.98279 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16726 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04162 | 0.724 |
DC3000/delta hrp 6h | 1.01642 | 1 |
DC3000/delta hrp 12h | 1.17345 | 1 |
DC3000/delta hrp 24h | 0.72065 | 0.05 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.24031 | 0.208 |
DC3000 delta B/DC3000 delta AB | 1.41034 | 0.117 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89851 | 1 |
Exp 36h | 1.03462 | 1 |
Exp 60h | 0.98386 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02541 | 1 |
Var 0h | 0.57396 | 0.782 |
Var 12h I row2-row1 | 1.00657 | 1 |
Var 12h NI row2-row1 | 1.10897 | 0.649 |
Var 36h I row2-row1 | 1.228 | 0.601 |
Var 36h NI row2-row1 | 1.32424 | 0.482 |
Var 60h I row2-row1 | 0.98958 | 1 |
Var 60h NI row2-row1 | 1.20188 | 0.904 |
Time course 0hI-0hNI | 1.07627 | 0.799 |
Time course 12hI-12hNI | 1.15131 | 0.107 |
Time course 36hI-36hNI | 1.27027 | 0.039 |
Time course 60hI-60hNI | 1.24705 | 0.033 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02635 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 0.8642 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.53441 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.39027 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.4673 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.96578 | 0.083 |
Manapal/WT (break) | 1.77635 | 0.183 |
Manapal/WT (red) | 1.42936 | 0.413 |
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