Expression of 1-1-5.2.11.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.02960.851
27DAP/17DAP1.136750.836
39DAP/27DAP0.995550.84
41DAP/39DAP0.935290.727
42DAP/41DAP0.935181
43DAP/42DAP1.092930.949
47DAP/43DAP1.032230.756
52DAP/47DAP1.007740.971
57DAP/52DAP1.022320.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.951070.308
17DAP/reference0.996830.957
27DAP/reference1.024710.529
39DAP/reference0.993120.901
41DAP/reference1.043970.421
42DAP/reference1.012220.731
43DAP/reference1.056180.118
47DAP/reference1.032650.295
52DAP/reference1.002451
57DAP/reference1.100670.141

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.924010.178
27DAP/17DAP1.014120.957
39DAP/27DAP1.025440.728
41DAP/39DAP1.014460.895
42DAP/41DAP1.002430.925
43DAP/42DAP1.030790.478
47DAP/43DAP1.004940.969
52DAP/47DAP1.009090.979
57DAP/52DAP0.971750.605
57DAP/7DAP1.013691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.920740.077
17DAP/reference0.878190.011
27DAP/reference0.887990.015
39DAP/reference0.986390.411
41DAP/reference0.985940.489
42DAP/reference1.008951
43DAP/reference0.968920.183
47DAP/reference0.958840.383
52DAP/reference0.917690.137
57DAP/reference0.939120.105

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.048280.325
17DAP/reference1.000910.924
27DAP/reference0.79360.212
39DAP/reference1.006171
41DAP/reference0.871350.014
42DAP/reference0.985360.534
43DAP/reference0.995360.814
47DAP/reference1.031310.413
52DAP/reference0.99610.666
57DAP/reference0.993910.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.869760.037
17DAP/reference0.961790.358
27DAP/reference0.925810.048
39DAP/reference0.943130.111
41DAP/reference0.936580.07
42DAP/reference0.834730.016
43DAP/reference0.92850.098
47DAP/reference0.944730.132
52DAP/reference0.935230.464
57DAP/reference0.937340.238

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.040460.966
26DAP/20DAP1.006791
34DAP/26DAP1.040811
51DAP/34DAP0.955140.598
52DAP/51DAP1.013740.848
53DAP/52DAP1.052470.768
55DAP/53DAP1.072260.547
57DAP/55DAP0.956840.828
62DAP/57DAP0.993611
68DAP/62DAP1.155830.664
68DAP/14DAP1.291240.099

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.926720.239

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.034741
Mature Green Tomato/Ripe Tomato1.04320.835
Immature Eggplant/Mature Eggplant1.310560.278
Ripe Pepper/Ripe Tomato1.443431
Mature Eggplant/Ripe Tomato2.621180.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.906590.944
1-1-2/M821.011391
12-2/M820.989151
12-4/M820.918740.358
1-3/M820.975710.378
2-1-1/M820.884330.465
2-1/M821.259731
2-6/M820.950951
3-2/M821.000591
4-1-1/M820.971771
4-1/M820.603641
4-3-2/M820.91491
4-3/M820.945381
5-3/M820.987741
6-2/M820.993381
6-3/M821.053911
7-1/M820.886340.803
7-2/M820.926390.796
9-3-2/M820.903590.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.094650.584
IL7-5/WTpooled1.357610.75
IL7-3/WTpooled0.936031
IL12-4/WTpooled1.050580.624
IL1-4/WTpooled1.045291
WT/WTpooled0.983081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.982611

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.003711
DC3000/delta hrp 6h1.364331
DC3000/delta hrp 12h0.955091
DC3000/delta hrp 24h1.072180.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.996411
DC3000 delta B/DC3000 delta AB1.118660.282

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.905761
Exp 36h1.158691
Exp 60h1.292360.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.994011
Var 0h1.029751
Var 12h I row2-row11.117590.406
Var 12h NI row2-row10.885140.466
Var 36h I row2-row11.141111
Var 36h NI row2-row10.919750.549
Var 60h I row2-row11.226911
Var 60h NI row2-row11.117641
Time course 0hI-0hNI1.063590.833
Time course 12hI-12hNI0.969270.795
Time course 36hI-36hNI0.978230.441
Time course 60hI-60hNI1.115340.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.930320.567
transgenic ySAMdc/azygous control (breaker)1.441010.248
transgenic ySAMdc/azygous control (red)1.30550.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.944790.062

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.92741
Manapal/WT (break)0.892880.299
Manapal/WT (red)0.833190.184