Expression of 1-1-5.2.11.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.096091
27DAP/17DAP0.723330.451
39DAP/27DAP1.337720.481
41DAP/39DAP0.815650.377
42DAP/41DAP1.408560.566
43DAP/42DAP0.941080.883
47DAP/43DAP1.093820.756
52DAP/47DAP1.183080.724
57DAP/52DAP1.151690.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.890950.205
17DAP/reference0.850710.028
27DAP/reference0.922430.201
39DAP/reference1.01070.885
41DAP/reference0.914120.201
42DAP/reference0.886830.026
43DAP/reference0.956040.611
47DAP/reference0.978370.445
52DAP/reference1.06370.576
57DAP/reference1.074040.433

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.04681
27DAP/17DAP0.947090.878
39DAP/27DAP0.900580.179
41DAP/39DAP0.954060.861
42DAP/41DAP0.991790.84
43DAP/42DAP0.914560.466
47DAP/43DAP0.987050.911
52DAP/47DAP0.80010.261
57DAP/52DAP1.110980.643
57DAP/7DAP0.939291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.533980.038
17DAP/reference1.270510.01
27DAP/reference1.406910.012
39DAP/reference1.05910.74
41DAP/reference0.924090.153
42DAP/reference1.064680.889
43DAP/reference0.900880.079
47DAP/reference1.032040.901
52DAP/reference1.052310.491
57DAP/reference1.205630.076

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.950430.548
17DAP/reference0.995980.83
27DAP/reference1.054280.988
39DAP/reference0.969960.485
41DAP/reference0.901190.164
42DAP/reference0.893330.098
43DAP/reference0.875480.068
47DAP/reference0.89360.149
52DAP/reference0.942960.302
57DAP/reference0.804050.073

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.47510.019
17DAP/reference1.08640.531
27DAP/reference1.171990.062
39DAP/reference1.114320.045
41DAP/reference1.177050.029
42DAP/reference1.387420.034
43DAP/reference1.151490.179
47DAP/reference0.857020.132
52DAP/reference1.457980.108
57DAP/reference1.068370.717

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.076390.966
26DAP/20DAP0.944091
34DAP/26DAP1.062141
51DAP/34DAP0.967450.816
52DAP/51DAP0.99591
53DAP/52DAP1.804080.623
55DAP/53DAP1.315380.399
57DAP/55DAP0.957970.812
62DAP/57DAP1.118850.8
68DAP/62DAP1.140720.21
68DAP/14DAP2.242530.039

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.934970.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.855530.522
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.42126
Mature Eggplant/Ripe Tomato0.45456

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.5124
12-2/M82N/AN/A
12-4/M821.072981
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.08266
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.13104

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.864121
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.988661
IL12-4/WTpooled1.124110.595
IL1-4/WTpooled1.207951
WT/WTpooled0.855791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.974820.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.087980.823
DC3000/delta hrp 6h1.105371
DC3000/delta hrp 12h1.024241
DC3000/delta hrp 24h0.974810.861

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.822610.629
DC3000 delta B/DC3000 delta AB0.7030.026

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.897861
Exp 36h1.618291
Exp 60h1.598371

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.0211
Var 0h0.701230.457
Var 12h I row2-row10.948650.514
Var 12h NI row2-row10.817810.713
Var 36h I row2-row10.728511
Var 36h NI row2-row10.886420.584
Var 60h I row2-row10.928190.439
Var 60h NI row2-row11.098190.904
Time course 0hI-0hNI1.00640.867
Time course 12hI-12hNI0.949980.586
Time course 36hI-36hNI0.831240.054
Time course 60hI-60hNI0.656510.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.016010.482
transgenic ySAMdc/azygous control (breaker)0.776090.173
transgenic ySAMdc/azygous control (red)0.933831

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.027580.395

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.961140.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.940171
Manapal/WT (break)1.024811
Manapal/WT (red)0.808070.188