Expression of 1-1-5.2.11.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09609 | 1 |
27DAP/17DAP | 0.72333 | 0.451 |
39DAP/27DAP | 1.33772 | 0.481 |
41DAP/39DAP | 0.81565 | 0.377 |
42DAP/41DAP | 1.40856 | 0.566 |
43DAP/42DAP | 0.94108 | 0.883 |
47DAP/43DAP | 1.09382 | 0.756 |
52DAP/47DAP | 1.18308 | 0.724 |
57DAP/52DAP | 1.15169 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89095 | 0.205 |
17DAP/reference | 0.85071 | 0.028 |
27DAP/reference | 0.92243 | 0.201 |
39DAP/reference | 1.0107 | 0.885 |
41DAP/reference | 0.91412 | 0.201 |
42DAP/reference | 0.88683 | 0.026 |
43DAP/reference | 0.95604 | 0.611 |
47DAP/reference | 0.97837 | 0.445 |
52DAP/reference | 1.0637 | 0.576 |
57DAP/reference | 1.07404 | 0.433 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0468 | 1 |
27DAP/17DAP | 0.94709 | 0.878 |
39DAP/27DAP | 0.90058 | 0.179 |
41DAP/39DAP | 0.95406 | 0.861 |
42DAP/41DAP | 0.99179 | 0.84 |
43DAP/42DAP | 0.91456 | 0.466 |
47DAP/43DAP | 0.98705 | 0.911 |
52DAP/47DAP | 0.8001 | 0.261 |
57DAP/52DAP | 1.11098 | 0.643 |
57DAP/7DAP | 0.93929 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.53398 | 0.038 |
17DAP/reference | 1.27051 | 0.01 |
27DAP/reference | 1.40691 | 0.012 |
39DAP/reference | 1.0591 | 0.74 |
41DAP/reference | 0.92409 | 0.153 |
42DAP/reference | 1.06468 | 0.889 |
43DAP/reference | 0.90088 | 0.079 |
47DAP/reference | 1.03204 | 0.901 |
52DAP/reference | 1.05231 | 0.491 |
57DAP/reference | 1.20563 | 0.076 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95043 | 0.548 |
17DAP/reference | 0.99598 | 0.83 |
27DAP/reference | 1.05428 | 0.988 |
39DAP/reference | 0.96996 | 0.485 |
41DAP/reference | 0.90119 | 0.164 |
42DAP/reference | 0.89333 | 0.098 |
43DAP/reference | 0.87548 | 0.068 |
47DAP/reference | 0.8936 | 0.149 |
52DAP/reference | 0.94296 | 0.302 |
57DAP/reference | 0.80405 | 0.073 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.4751 | 0.019 |
17DAP/reference | 1.0864 | 0.531 |
27DAP/reference | 1.17199 | 0.062 |
39DAP/reference | 1.11432 | 0.045 |
41DAP/reference | 1.17705 | 0.029 |
42DAP/reference | 1.38742 | 0.034 |
43DAP/reference | 1.15149 | 0.179 |
47DAP/reference | 0.85702 | 0.132 |
52DAP/reference | 1.45798 | 0.108 |
57DAP/reference | 1.06837 | 0.717 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07639 | 0.966 |
26DAP/20DAP | 0.94409 | 1 |
34DAP/26DAP | 1.06214 | 1 |
51DAP/34DAP | 0.96745 | 0.816 |
52DAP/51DAP | 0.9959 | 1 |
53DAP/52DAP | 1.80408 | 0.623 |
55DAP/53DAP | 1.31538 | 0.399 |
57DAP/55DAP | 0.95797 | 0.812 |
62DAP/57DAP | 1.11885 | 0.8 |
68DAP/62DAP | 1.14072 | 0.21 |
68DAP/14DAP | 2.24253 | 0.039 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93497 | 0.466 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.85553 | 0.522 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.42126 | |
Mature Eggplant/Ripe Tomato | 0.45456 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.5124 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.07298 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.08266 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.13104 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.86412 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.98866 | 1 |
IL12-4/WTpooled | 1.12411 | 0.595 |
IL1-4/WTpooled | 1.20795 | 1 |
WT/WTpooled | 0.85579 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97482 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08798 | 0.823 |
DC3000/delta hrp 6h | 1.10537 | 1 |
DC3000/delta hrp 12h | 1.02424 | 1 |
DC3000/delta hrp 24h | 0.97481 | 0.861 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.82261 | 0.629 |
DC3000 delta B/DC3000 delta AB | 0.703 | 0.026 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89786 | 1 |
Exp 36h | 1.61829 | 1 |
Exp 60h | 1.59837 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.021 | 1 |
Var 0h | 0.70123 | 0.457 |
Var 12h I row2-row1 | 0.94865 | 0.514 |
Var 12h NI row2-row1 | 0.81781 | 0.713 |
Var 36h I row2-row1 | 0.72851 | 1 |
Var 36h NI row2-row1 | 0.88642 | 0.584 |
Var 60h I row2-row1 | 0.92819 | 0.439 |
Var 60h NI row2-row1 | 1.09819 | 0.904 |
Time course 0hI-0hNI | 1.0064 | 0.867 |
Time course 12hI-12hNI | 0.94998 | 0.586 |
Time course 36hI-36hNI | 0.83124 | 0.054 |
Time course 60hI-60hNI | 0.65651 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01601 | 0.482 |
transgenic ySAMdc/azygous control (breaker) | 0.77609 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.93383 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02758 | 0.395 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.96114 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.94017 | 1 |
Manapal/WT (break) | 1.02481 | 1 |
Manapal/WT (red) | 0.80807 | 0.188 |
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