Expression of 1-1-5.2.11.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89953 | 0.475 |
27DAP/17DAP | 1.15692 | 0.813 |
39DAP/27DAP | 1.04842 | 1 |
41DAP/39DAP | 1.23522 | 0.27 |
42DAP/41DAP | 1.22685 | 0.458 |
43DAP/42DAP | 1.05334 | 1 |
47DAP/43DAP | 1.14399 | 0.715 |
52DAP/47DAP | 0.87133 | 0.639 |
57DAP/52DAP | 1.52876 | 0.784 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01135 | 1 |
17DAP/reference | 1.22588 | 0.132 |
27DAP/reference | 0.94371 | 0.538 |
39DAP/reference | 0.99133 | 0.885 |
41DAP/reference | 1.01435 | 0.963 |
42DAP/reference | 0.99457 | 0.469 |
43DAP/reference | 1.10939 | 0.325 |
47DAP/reference | 1.08586 | 0.318 |
52DAP/reference | 0.98711 | 0.598 |
57DAP/reference | 1.09143 | 0.153 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89102 | 0.238 |
27DAP/17DAP | 1.05765 | 0.836 |
39DAP/27DAP | 1.11729 | 0.245 |
41DAP/39DAP | 0.96036 | 0.91 |
42DAP/41DAP | 1.0433 | 0.763 |
43DAP/42DAP | 1.0563 | 0.413 |
47DAP/43DAP | 1.06051 | 0.65 |
52DAP/47DAP | 0.95365 | 0.719 |
57DAP/52DAP | 0.97023 | 0.668 |
57DAP/7DAP | 1.07005 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34999 | 0.054 |
17DAP/reference | 1.11813 | 0.18 |
27DAP/reference | 1.00512 | 0.8 |
39DAP/reference | 1.26297 | 0.008 |
41DAP/reference | 1.3257 | 0.057 |
42DAP/reference | 1.19381 | 0.233 |
43DAP/reference | 1.38477 | 0.01 |
47DAP/reference | 1.17508 | 0.595 |
52DAP/reference | 1.25586 | 0.024 |
57DAP/reference | 1.22057 | 0.41 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19745 | 0.484 |
17DAP/reference | 1.03616 | 0.806 |
27DAP/reference | 0.93108 | 0.393 |
39DAP/reference | 0.71962 | 0.017 |
41DAP/reference | 0.85518 | 0.112 |
42DAP/reference | 0.93325 | 0.321 |
43DAP/reference | 1.02949 | 0.875 |
47DAP/reference | 0.93475 | 0.253 |
52DAP/reference | 0.65106 | 0.018 |
57DAP/reference | 0.85766 | 0.18 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37552 | 0.025 |
17DAP/reference | 0.98886 | 0.727 |
27DAP/reference | 1.09147 | 0.179 |
39DAP/reference | 1.04336 | 0.578 |
41DAP/reference | 1.105 | 0.425 |
42DAP/reference | 1.15106 | 0.194 |
43DAP/reference | 0.92709 | 0.416 |
47DAP/reference | 0.91287 | 0.357 |
52DAP/reference | 1.50851 | 0.056 |
57DAP/reference | 1.29489 | 0.614 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92706 | 1 |
26DAP/20DAP | 0.95308 | 1 |
34DAP/26DAP | 1.03614 | 1 |
51DAP/34DAP | 1.02437 | 0.869 |
52DAP/51DAP | 0.91258 | 1 |
53DAP/52DAP | 1.0612 | 0.608 |
55DAP/53DAP | 1.06079 | 0.562 |
57DAP/55DAP | 0.86924 | 0.479 |
62DAP/57DAP | 1.12766 | 0.04 |
68DAP/62DAP | 1.32181 | 0.808 |
68DAP/14DAP | 1.43733 | 0.676 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91729 | 0.137 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.98231 | 0.783 |
Mature Green Tomato/Ripe Tomato | 0.76223 | 0.347 |
Immature Eggplant/Mature Eggplant | 1.083 | 0.439 |
Ripe Pepper/Ripe Tomato | 1.28527 | 1 |
Mature Eggplant/Ripe Tomato | 1.23849 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10217 | |
1-1-2/M82 | 1.06273 | 1 |
12-2/M82 | 0.99521 | 1 |
12-4/M82 | 0.85771 | 0.619 |
1-3/M82 | 1.36632 | 0.255 |
2-1-1/M82 | 0.88611 | 0.465 |
2-1/M82 | 1.30444 | 1 |
2-6/M82 | 1.02977 | 1 |
3-2/M82 | 0.94731 | |
4-1-1/M82 | 1.42384 | |
4-1/M82 | 0.64475 | |
4-3-2/M82 | 0.95769 | 1 |
4-3/M82 | 1.12461 | 0.268 |
5-3/M82 | 1.32146 | 0.378 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.93806 | 1 |
7-1/M82 | 0.69842 | 0.375 |
7-2/M82 | 1.19103 | 0.385 |
9-3-2/M82 | 0.87979 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.92718 | 1 |
IL7-5/WTpooled | 0.96439 | |
IL7-3/WTpooled | 0.91762 | 0.418 |
IL12-4/WTpooled | 1.16044 | 0.737 |
IL1-4/WTpooled | 0.93575 | 0.834 |
WT/WTpooled | 0.96066 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.54698 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.20189 | 0.692 |
DC3000/delta hrp 6h | 1.02598 | 1 |
DC3000/delta hrp 12h | 0.91091 | 1 |
DC3000/delta hrp 24h | 1.15592 | 0.264 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.19651 | 0.16 |
DC3000 delta B/DC3000 delta AB | 1.05132 | 0.544 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.23844 | 0.489 |
Exp 60h | 1.32911 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97276 | 1 |
Var 0h | 0.91664 | 0.933 |
Var 12h I row2-row1 | 1.04492 | 0.228 |
Var 12h NI row2-row1 | 0.95209 | 0.906 |
Var 36h I row2-row1 | 1.09724 | 0.601 |
Var 36h NI row2-row1 | 0.94531 | 0.549 |
Var 60h I row2-row1 | 0.9596 | 0.285 |
Var 60h NI row2-row1 | 1.10271 | 0.904 |
Time course 0hI-0hNI | 1.05626 | 0.764 |
Time course 12hI-12hNI | 0.99642 | 1 |
Time course 36hI-36hNI | 1.27674 | 0.006 |
Time course 60hI-60hNI | 2.33069 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92213 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.21046 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.10701 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03429 | 0.213 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.9485 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.84731 | 1 |
Manapal/WT (break) | 0.6407 | 0.333 |
Manapal/WT (red) | 0.65836 | 0.181 |
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