Expression of 1-1-5.2.11.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.899530.475
27DAP/17DAP1.156920.813
39DAP/27DAP1.048421
41DAP/39DAP1.235220.27
42DAP/41DAP1.226850.458
43DAP/42DAP1.053341
47DAP/43DAP1.143990.715
52DAP/47DAP0.871330.639
57DAP/52DAP1.528760.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.011351
17DAP/reference1.225880.132
27DAP/reference0.943710.538
39DAP/reference0.991330.885
41DAP/reference1.014350.963
42DAP/reference0.994570.469
43DAP/reference1.109390.325
47DAP/reference1.085860.318
52DAP/reference0.987110.598
57DAP/reference1.091430.153

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.891020.238
27DAP/17DAP1.057650.836
39DAP/27DAP1.117290.245
41DAP/39DAP0.960360.91
42DAP/41DAP1.04330.763
43DAP/42DAP1.05630.413
47DAP/43DAP1.060510.65
52DAP/47DAP0.953650.719
57DAP/52DAP0.970230.668
57DAP/7DAP1.070051

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.349990.054
17DAP/reference1.118130.18
27DAP/reference1.005120.8
39DAP/reference1.262970.008
41DAP/reference1.32570.057
42DAP/reference1.193810.233
43DAP/reference1.384770.01
47DAP/reference1.175080.595
52DAP/reference1.255860.024
57DAP/reference1.220570.41

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.197450.484
17DAP/reference1.036160.806
27DAP/reference0.931080.393
39DAP/reference0.719620.017
41DAP/reference0.855180.112
42DAP/reference0.933250.321
43DAP/reference1.029490.875
47DAP/reference0.934750.253
52DAP/reference0.651060.018
57DAP/reference0.857660.18

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.375520.025
17DAP/reference0.988860.727
27DAP/reference1.091470.179
39DAP/reference1.043360.578
41DAP/reference1.1050.425
42DAP/reference1.151060.194
43DAP/reference0.927090.416
47DAP/reference0.912870.357
52DAP/reference1.508510.056
57DAP/reference1.294890.614

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.927061
26DAP/20DAP0.953081
34DAP/26DAP1.036141
51DAP/34DAP1.024370.869
52DAP/51DAP0.912581
53DAP/52DAP1.06120.608
55DAP/53DAP1.060790.562
57DAP/55DAP0.869240.479
62DAP/57DAP1.127660.04
68DAP/62DAP1.321810.808
68DAP/14DAP1.437330.676

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.917290.137

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.982310.783
Mature Green Tomato/Ripe Tomato0.762230.347
Immature Eggplant/Mature Eggplant1.0830.439
Ripe Pepper/Ripe Tomato1.285271
Mature Eggplant/Ripe Tomato1.238490.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.10217
1-1-2/M821.062731
12-2/M820.995211
12-4/M820.857710.619
1-3/M821.366320.255
2-1-1/M820.886110.465
2-1/M821.304441
2-6/M821.029771
3-2/M820.94731
4-1-1/M821.42384
4-1/M820.64475
4-3-2/M820.957691
4-3/M821.124610.268
5-3/M821.321460.378
6-2/M82N/AN/A
6-3/M820.938061
7-1/M820.698420.375
7-2/M821.191030.385
9-3-2/M820.879790.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.927181
IL7-5/WTpooled0.96439
IL7-3/WTpooled0.917620.418
IL12-4/WTpooled1.160440.737
IL1-4/WTpooled0.935750.834
WT/WTpooled0.960661

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.546980.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.201890.692
DC3000/delta hrp 6h1.025981
DC3000/delta hrp 12h0.910911
DC3000/delta hrp 24h1.155920.264

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.196510.16
DC3000 delta B/DC3000 delta AB1.051320.544

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.238440.489
Exp 60h1.329110.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.972761
Var 0h0.916640.933
Var 12h I row2-row11.044920.228
Var 12h NI row2-row10.952090.906
Var 36h I row2-row11.097240.601
Var 36h NI row2-row10.945310.549
Var 60h I row2-row10.95960.285
Var 60h NI row2-row11.102710.904
Time course 0hI-0hNI1.056260.764
Time course 12hI-12hNI0.996421
Time course 36hI-36hNI1.276740.006
Time course 60hI-60hNI2.330690.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.922130.362
transgenic ySAMdc/azygous control (breaker)1.210460.178
transgenic ySAMdc/azygous control (red)1.107010.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.034290.213

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.94850.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.847311
Manapal/WT (break)0.64070.333
Manapal/WT (red)0.658360.181