Expression of 1-1-5.2.13.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.48720.028
27DAP/17DAP1.04270.92
39DAP/27DAP0.877620.544
41DAP/39DAP1.211840.921
42DAP/41DAP0.986911
43DAP/42DAP0.880760.776
47DAP/43DAP0.66890.078
52DAP/47DAP2.091470.112
57DAP/52DAP0.814280.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.097770.334
17DAP/reference1.064610.342
27DAP/reference0.993310.797
39DAP/reference0.953740.446
41DAP/reference1.008810.963
42DAP/reference0.879050.038
43DAP/reference1.026010.899
47DAP/reference0.851620.008
52DAP/reference0.876070.086
57DAP/reference0.928580.131

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.793950.073
27DAP/17DAP0.881460.475
39DAP/27DAP1.277510.219
41DAP/39DAP1.092050.705
42DAP/41DAP0.869420.318
43DAP/42DAP1.153730.297
47DAP/43DAP1.034160.973
52DAP/47DAP1.62320.076
57DAP/52DAP1.70370.091
57DAP/7DAP1.253480.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.971930.246
17DAP/reference0.931110.072
27DAP/reference1.038940.664
39DAP/reference1.079010.411
41DAP/reference0.972370.512
42DAP/reference1.09060.686
43DAP/reference1.245410.053
47DAP/reference0.991681
52DAP/reference0.881750.137
57DAP/reference0.951220.341

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.091520.524
17DAP/reference0.958930.523
27DAP/reference0.980270.576
39DAP/reference1.262490.978
41DAP/reference1.000050.615
42DAP/reference1.101420.969
43DAP/reference1.022341
47DAP/reference0.911070.107
52DAP/reference0.893650.203
57DAP/reference1.233020.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.912610.335
17DAP/reference0.942440.488
27DAP/reference0.960860.397
39DAP/reference0.93590.271
41DAP/reference0.843770.043
42DAP/reference0.922140.361
43DAP/reference0.756950.024
47DAP/reference0.872580.054
52DAP/reference0.944990.611
57DAP/reference0.853720.184

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.705510.981
26DAP/20DAP0.753590.512
34DAP/26DAP1.200670.19
51DAP/34DAP1.215880.164
52DAP/51DAP1.185740.481
53DAP/52DAP0.996270.951
55DAP/53DAP1.135160.12
57DAP/55DAP0.863330.577
62DAP/57DAP1.068260.902
68DAP/62DAP0.900290.505
68DAP/14DAP1.125020.936

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.381260.055

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.357550.094
Mature Green Tomato/Ripe Tomato0.264850.045
Immature Eggplant/Mature Eggplant3.089770.05
Ripe Pepper/Ripe Tomato0.22047
Mature Eggplant/Ripe Tomato0.527231

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.15002
1-1-2/M821.23512
12-2/M822.74007
12-4/M821.069221
1-3/M821.2628
2-1-1/M821.11392
2-1/M82N/AN/A
2-6/M821.361510.594
3-2/M82N/AN/A
4-1-1/M821.44385
4-1/M821.19321
4-3-2/M821.31893
4-3/M821.383261
5-3/M820.614590.49
6-2/M823.470711
6-3/M820.925471
7-1/M820.64356
7-2/M821.720830.324
9-3-2/M821.09337

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.098670.277
IL2-6/WTpooled0.944461
IL7-5/WTpooled0.807221
IL7-3/WTpooled1.039881
IL12-4/WTpooled1.007471
IL1-4/WTpooled0.880590.699
WT/WTpooled1.023191

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.473190.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.039160.921
DC3000/delta hrp 6h1.207221
DC3000/delta hrp 12h1.092841
DC3000/delta hrp 24h1.411670.05

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.449290.045
DC3000 delta B/DC3000 delta AB1.162670.259

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.960661
Exp 36h1.173611
Exp 60h1.208340.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.061871
Var 0h0.967880.98
Var 12h I row2-row11.512240.187
Var 12h NI row2-row10.932830.906
Var 36h I row2-row10.819580.575
Var 36h NI row2-row10.966120.791
Var 60h I row2-row11.110090.562
Var 60h NI row2-row11.285510.904
Time course 0hI-0hNI0.970070.906
Time course 12hI-12hNI1.278370.009
Time course 36hI-36hNI0.941810.468
Time course 60hI-60hNI1.200510.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.14590.261
transgenic ySAMdc/azygous control (breaker)0.497040.137
transgenic ySAMdc/azygous control (red)1.121570.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.853280.048

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.033931

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.610531
Manapal/WT (break)0.74381
Manapal/WT (red)0.41130.181