Expression of 1-1-5.2.13.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.4872 | 0.028 |
27DAP/17DAP | 1.0427 | 0.92 |
39DAP/27DAP | 0.87762 | 0.544 |
41DAP/39DAP | 1.21184 | 0.921 |
42DAP/41DAP | 0.98691 | 1 |
43DAP/42DAP | 0.88076 | 0.776 |
47DAP/43DAP | 0.6689 | 0.078 |
52DAP/47DAP | 2.09147 | 0.112 |
57DAP/52DAP | 0.81428 | 0.784 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09777 | 0.334 |
17DAP/reference | 1.06461 | 0.342 |
27DAP/reference | 0.99331 | 0.797 |
39DAP/reference | 0.95374 | 0.446 |
41DAP/reference | 1.00881 | 0.963 |
42DAP/reference | 0.87905 | 0.038 |
43DAP/reference | 1.02601 | 0.899 |
47DAP/reference | 0.85162 | 0.008 |
52DAP/reference | 0.87607 | 0.086 |
57DAP/reference | 0.92858 | 0.131 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79395 | 0.073 |
27DAP/17DAP | 0.88146 | 0.475 |
39DAP/27DAP | 1.27751 | 0.219 |
41DAP/39DAP | 1.09205 | 0.705 |
42DAP/41DAP | 0.86942 | 0.318 |
43DAP/42DAP | 1.15373 | 0.297 |
47DAP/43DAP | 1.03416 | 0.973 |
52DAP/47DAP | 1.6232 | 0.076 |
57DAP/52DAP | 1.7037 | 0.091 |
57DAP/7DAP | 1.25348 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97193 | 0.246 |
17DAP/reference | 0.93111 | 0.072 |
27DAP/reference | 1.03894 | 0.664 |
39DAP/reference | 1.07901 | 0.411 |
41DAP/reference | 0.97237 | 0.512 |
42DAP/reference | 1.0906 | 0.686 |
43DAP/reference | 1.24541 | 0.053 |
47DAP/reference | 0.99168 | 1 |
52DAP/reference | 0.88175 | 0.137 |
57DAP/reference | 0.95122 | 0.341 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09152 | 0.524 |
17DAP/reference | 0.95893 | 0.523 |
27DAP/reference | 0.98027 | 0.576 |
39DAP/reference | 1.26249 | 0.978 |
41DAP/reference | 1.00005 | 0.615 |
42DAP/reference | 1.10142 | 0.969 |
43DAP/reference | 1.02234 | 1 |
47DAP/reference | 0.91107 | 0.107 |
52DAP/reference | 0.89365 | 0.203 |
57DAP/reference | 1.23302 | 0.135 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91261 | 0.335 |
17DAP/reference | 0.94244 | 0.488 |
27DAP/reference | 0.96086 | 0.397 |
39DAP/reference | 0.9359 | 0.271 |
41DAP/reference | 0.84377 | 0.043 |
42DAP/reference | 0.92214 | 0.361 |
43DAP/reference | 0.75695 | 0.024 |
47DAP/reference | 0.87258 | 0.054 |
52DAP/reference | 0.94499 | 0.611 |
57DAP/reference | 0.85372 | 0.184 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.70551 | 0.981 |
26DAP/20DAP | 0.75359 | 0.512 |
34DAP/26DAP | 1.20067 | 0.19 |
51DAP/34DAP | 1.21588 | 0.164 |
52DAP/51DAP | 1.18574 | 0.481 |
53DAP/52DAP | 0.99627 | 0.951 |
55DAP/53DAP | 1.13516 | 0.12 |
57DAP/55DAP | 0.86333 | 0.577 |
62DAP/57DAP | 1.06826 | 0.902 |
68DAP/62DAP | 0.90029 | 0.505 |
68DAP/14DAP | 1.12502 | 0.936 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.38126 | 0.055 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.35755 | 0.094 |
Mature Green Tomato/Ripe Tomato | 0.26485 | 0.045 |
Immature Eggplant/Mature Eggplant | 3.08977 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.22047 | |
Mature Eggplant/Ripe Tomato | 0.52723 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.15002 | |
1-1-2/M82 | 1.23512 | |
12-2/M82 | 2.74007 | |
12-4/M82 | 1.06922 | 1 |
1-3/M82 | 1.2628 | |
2-1-1/M82 | 1.11392 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.36151 | 0.594 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.44385 | |
4-1/M82 | 1.19321 | |
4-3-2/M82 | 1.31893 | |
4-3/M82 | 1.38326 | 1 |
5-3/M82 | 0.61459 | 0.49 |
6-2/M82 | 3.47071 | 1 |
6-3/M82 | 0.92547 | 1 |
7-1/M82 | 0.64356 | |
7-2/M82 | 1.72083 | 0.324 |
9-3-2/M82 | 1.09337 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.09867 | 0.277 |
IL2-6/WTpooled | 0.94446 | 1 |
IL7-5/WTpooled | 0.80722 | 1 |
IL7-3/WTpooled | 1.03988 | 1 |
IL12-4/WTpooled | 1.00747 | 1 |
IL1-4/WTpooled | 0.88059 | 0.699 |
WT/WTpooled | 1.02319 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.47319 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03916 | 0.921 |
DC3000/delta hrp 6h | 1.20722 | 1 |
DC3000/delta hrp 12h | 1.09284 | 1 |
DC3000/delta hrp 24h | 1.41167 | 0.05 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.44929 | 0.045 |
DC3000 delta B/DC3000 delta AB | 1.16267 | 0.259 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96066 | 1 |
Exp 36h | 1.17361 | 1 |
Exp 60h | 1.20834 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06187 | 1 |
Var 0h | 0.96788 | 0.98 |
Var 12h I row2-row1 | 1.51224 | 0.187 |
Var 12h NI row2-row1 | 0.93283 | 0.906 |
Var 36h I row2-row1 | 0.81958 | 0.575 |
Var 36h NI row2-row1 | 0.96612 | 0.791 |
Var 60h I row2-row1 | 1.11009 | 0.562 |
Var 60h NI row2-row1 | 1.28551 | 0.904 |
Time course 0hI-0hNI | 0.97007 | 0.906 |
Time course 12hI-12hNI | 1.27837 | 0.009 |
Time course 36hI-36hNI | 0.94181 | 0.468 |
Time course 60hI-60hNI | 1.20051 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.1459 | 0.261 |
transgenic ySAMdc/azygous control (breaker) | 0.49704 | 0.137 |
transgenic ySAMdc/azygous control (red) | 1.12157 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.85328 | 0.048 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.03393 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.61053 | 1 |
Manapal/WT (break) | 0.7438 | 1 |
Manapal/WT (red) | 0.4113 | 0.181 |
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