Tomato Functional Genomics Database (TFGD)

Expression of 1-1-5.2.14.10

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.09846	0.838
27DAP/17DAP	0.83299	0.587
39DAP/27DAP	0.90032	0.631
41DAP/39DAP	1.37229	0.37
42DAP/41DAP	0.80063	0.774
43DAP/42DAP	0.88	0.801
47DAP/43DAP	0.81015	0.424
52DAP/47DAP	1.13788	0.967
57DAP/52DAP	0.97239	0.957

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.27183
17DAP/reference	N/A	N/A
27DAP/reference	0.47122
39DAP/reference	N/A	N/A
41DAP/reference	1.0627	1
42DAP/reference	1.13059	0.931
43DAP/reference	0.37197
47DAP/reference	1.3804	0.404
52DAP/reference	0.33014
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.79872	0.363
27DAP/17DAP	0.92901	0.854
39DAP/27DAP	1.02921	0.824
41DAP/39DAP	1.91978	0.015
42DAP/41DAP	0.61328	0.265
43DAP/42DAP	0.48348	0.07
47DAP/43DAP	0.97027	0.877
52DAP/47DAP	1.02203	0.97
57DAP/52DAP	1.14889	0.856
57DAP/7DAP	0.80779

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96301	0.495
17DAP/reference	0.72166	0.012
27DAP/reference	0.78254	0.028
39DAP/reference	0.70343	0.011
41DAP/reference	0.71887	0.044
42DAP/reference	0.8165	0.09
43DAP/reference	0.97087	0.403
47DAP/reference	1.18633	0.337
52DAP/reference	0.96369	0.363
57DAP/reference	0.89619	0.149

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.23967
17DAP/reference	2.07221
27DAP/reference	1.42827	0.26
39DAP/reference	1.22371	1
41DAP/reference	1.08135
42DAP/reference	1.03164
43DAP/reference	1.0499	1
47DAP/reference	1.38185
52DAP/reference	1.40579	0.194
57DAP/reference	2.18059	0.016

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.70205	0.038
17DAP/reference	0.75186	0.281
27DAP/reference	0.67241	0.023
39DAP/reference	0.74935	0.025
41DAP/reference	0.63331	0.018
42DAP/reference	0.71267	0.025
43DAP/reference	0.61863	0.016
47DAP/reference	N/A	N/A
52DAP/reference	0.86758	0.166
57DAP/reference	0.81408	0.242

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.84509	1
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.19957
51DAP/34DAP	N/A	N/A
52DAP/51DAP	N/A	N/A
53DAP/52DAP	2.33982	0.623
55DAP/53DAP	1.15225	0.951
57DAP/55DAP	0.95584	0.789
62DAP/57DAP	0.44707	0.002
68DAP/62DAP	1.02982	1
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.40378	0.115

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	1.13008
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.13813	0.277
IL2-6/WTpooled	1.45915
IL7-5/WTpooled	1.3687	0.792
IL7-3/WTpooled	2.09593
IL12-4/WTpooled	1.0591	0.737
IL1-4/WTpooled	0.88003	0.834
WT/WTpooled	1.0831	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.19214	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.16116	1
Var 0h	1.077	0.936
Var 12h I row2-row1	0.71763	0.338
Var 12h NI row2-row1	1.23401	0.649
Var 36h I row2-row1	0.99598	1
Var 36h NI row2-row1	0.78963	0.237
Var 60h I row2-row1	0.89656	0.439
Var 60h NI row2-row1	0.83769
Time course 0hI-0hNI	0.94037	0.692
Time course 12hI-12hNI	0.82534	0.506
Time course 36hI-36hNI	0.7265	0.027
Time course 60hI-60hNI	0.60703	0.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A